PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC04G13620.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 714aa    MW: 74364.5 Da    PI: 7.4706
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC04G13620.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY78.57.4e-25313356246
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTT CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpk 46 
                      +Dgy+WrKYGqK+vk se+prsYY+Ct+a+C vkkkvers+ +++
  OPUNC04G13620.1 313 EDGYSWRKYGQKQVKHSEYPRSYYKCTHANCVVKKKVERSH-EGH 356
                      8***************************************9.554 PP
2WRKY35.22.4e-11448469122
                      ---SS-EEEEEEE--TT-SS-E CS
             WRKY   1 ldDgynWrKYGqKevkgsefpr 22 
                      ldDgy+WrKYGqK+vkg+++pr
  OPUNC04G13620.1 448 LDDGYRWRKYGQKVVKGNPNPR 469
                      59*******************9 PP
3WRKY54.42.4e-175025392259
                      EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY  22 rsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      rsYY+Ct++gC v+k+ver+++d k v++tYeg+Hnhe
  OPUNC04G13620.1 502 RSYYKCTHPGCLVRKHVERASHDLKSVITTYEGKHNHE 539
                      9************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.3E-22303354IPR003657WRKY domain
PROSITE profilePS5081120.254307352IPR003657WRKY domain
SuperFamilySSF1182902.35E-20309355IPR003657WRKY domain
SMARTSM007743.1E-20312360IPR003657WRKY domain
PfamPF031068.7E-19313355IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.8E-34433468IPR003657WRKY domain
SuperFamilySSF1182902.35E-9440470IPR003657WRKY domain
PROSITE profilePS5081130.377443541IPR003657WRKY domain
SMARTSM007743.0E-34448540IPR003657WRKY domain
PfamPF031065.4E-7449470IPR003657WRKY domain
SuperFamilySSF1182901.7E-13501541IPR003657WRKY domain
PfamPF031063.4E-11502539IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.8E-34502541IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 714 aa     Download sequence    Send to blast
MEGDIVMEEW KDSNHRGAEY LMTMPLQNFL ADAFPPPELL AGEGGGSRVA DAGGFEKHGL  60
SVAVGSPPPP PPPPEDGHSP LPLTPQFGQK FGSGGGGSLA DRRARGGFSN IARISVPSSA  120
AASDVSSAGA PSPYVTIPPG LSPTTLLESP VFLSNAMGQA SPTTGKLHML GGANDNNPIR  180
FESPPIEERS GAFSFKPLNL ASSHYAAAEK TKSLPNNQHQ SLPISVKTEA SIQTAQDEEA  240
NQTRQSQLMQ PQFSGGKLSR AAPDTVPAAA AAGGGGGDGV ASPPDHGQPA EGDAKGDSSA  300
AVAAAAAAAA VAEDGYSWRK YGQKQVKHSE YPRSYYKCTH ANCVVKKKVE RSHEGHVHDG  360
AVAQLESPEG VDVTSAVSDE VGRDDKATHV LPLVAAAASA AAADGHSDEL ERKRRKLESC  420
ATMDMSTASR AVREPRVVIQ TTSEVDILDD GYRWRKYGQK VVKGNPNPRF VSSRPLEPLL  480
HFQSSSSMDA DLLFVVVVIV IRSYYKCTHP GCLVRKHVER ASHDLKSVIT TYEGKHNHEV  540
PAARNSGHPA GSAAAGGGGA GSSSQPHGIV GGGIGRRPEV PSLQESLMRL GGGCGAAPFA  600
PHFGLHLPPR DPLAPMSNFP YSLAHAASPA LRGLPPPPPP PPVAGLGAVV EGLKYPMLAP  660
PSVHPLLRHR QGGGMETMVV PKAEVKQEAV PAGAGRGAAV YQQAMSRVSL GNQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-30439542878Probable WRKY transcription factor 4
2lex_A2e-30439542878Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6064410.0AL606441.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0089K21, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634497.11e-167probable WRKY transcription factor 2 isoform X2
RefseqXP_015634498.11e-168WRKY transcription factor SUSIBA2 isoform X1
RefseqXP_015691496.11e-169PREDICTED: probable WRKY transcription factor 2, partial
TrEMBLA0A0E0KRS20.0A0A0E0KRS2_ORYPU; Uncharacterized protein
STRINGOPUNC04G13620.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP207538100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26440.14e-61WRKY DNA-binding protein 34