PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC04G11700.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 478aa MW: 52024.2 Da PI: 7.4588 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 125.3 | 5.2e-39 | 10 | 137 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 +ppGfrFhPtdeel+ +yLkkkv +k++l evi+evd++k+ePw+L+ + + + e + + k++t+ kn+ t++g+ k+tg+dk + OPUNC04G11700.1 10 VPPGFRFHPTDEELLLYYLKKKVGFEKFDL-EVIREVDLNKIEPWELQeVQDRVGAAERVVLLQPQGKQPTDASKNQPTNDGRGKETGRDKCIR 102 69****************************.99**************83333446678899999999*************************** PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrle 129 + + +++g++ktLvfy+grap+g+ktdW+mheyrle OPUNC04G11700.1 103 T-SYRKIGMRKTLVFYRGRAPHGQKTDWIMHEYRLE 137 9.8999****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-44 | 5 | 158 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 43.903 | 10 | 158 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.4E-18 | 11 | 136 | IPR003441 | NAC domain |
Pfam | PF08583 | 2.8E-14 | 396 | 465 | IPR013892 | Cytochrome c oxidase biogenesis protein Cmc1-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0055114 | Biological Process | oxidation-reduction process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0010181 | Molecular Function | FMN binding | ||||
GO:0016491 | Molecular Function | oxidoreductase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 478 aa Download sequence Send to blast |
MAAFSSSNGV PPGFRFHPTD EELLLYYLKK KVGFEKFDLE VIREVDLNKI EPWELQEVQD 60 RVGAAERVVL LQPQGKQPTD ASKNQPTNDG RGKETGRDKC IRTSYRKIGM RKTLVFYRGR 120 APHGQKTDWI MHEYRLEDAD ESQSTSEDGW VVCRVFKKKC FFKIGGGGGE GSGGSQGGDV 180 GGGGHLAVSP PLGGGHAMAA ASHYMHPHQY HHHHHAAAAS SFYYTQMQPA PEPPHAAYSH 240 HVQVQDLLTN HRPSSAADAG YDFSGLPVDH QHPGLDVGSS DGGGVAAGAD GDQAAAAAAA 300 GSTEQQWQAM DGFSNGGAGA AAVQQQLGAM SSGQRGGEMD LWGYGRSSPP PPPRFAPASV 360 TAKLAAALHR LHDEAPGGRS LAVESPRRGS HSSLEMHPPL TLHRHPMCAE IIEAFQKCHV 420 DHPVKKFFGE CTDLKIKLDQ CFRQEKALKR KANFEESKKF KEQLQAYKKE MAEKDKEP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 8e-36 | 10 | 159 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 8e-36 | 10 | 159 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 8e-36 | 10 | 159 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 8e-36 | 10 | 159 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
4dul_A | 8e-36 | 10 | 159 | 17 | 166 | NAC domain-containing protein 19 |
4dul_B | 8e-36 | 10 | 159 | 17 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC157500 | 1e-177 | AC157500.1 Oryza sativa (japonica cultivar-group) BAC clone OSJNBb0056O04, from chromosome 4, complete sequence. | |||
GenBank | AP014960 | 1e-177 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014661033.1 | 1e-166 | protein BEARSKIN1 | ||||
TrEMBL | A0A0E0KR20 | 0.0 | A0A0E0KR20_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC04G11700.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9297 | 30 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G10350.1 | 2e-56 | NAC domain containing protein 70 |