PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC04G11660.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 202aa MW: 23216.8 Da PI: 7.412 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 74.9 | 6.5e-24 | 10 | 58 | 2 | 50 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 rien rq tf+kRr g+lKKA+ELSvLCda++ v++fs++gk+ye + OPUNC04G11660.1 10 RIENPVHRQATFCKRRMGLLKKAKELSVLCDADIGVVVFSPHGKIYELA 58 8*********************************************965 PP | |||||||
2 | K-box | 59 | 2.1e-20 | 89 | 173 | 16 | 99 |
K-box 16 slqqelakLkkeienLqreqRhllGe.dLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 qq++ L++e++ Lq+++R + Ge d+++++l eLq+Le++Le +++iRs+K++++ ++ie l+ ke l+ +n L++++ OPUNC04G11660.1 89 VTQQDVLLLRQEVDLLQNSLRYMYGErDINNMNLGELQSLESNLEVWVNNIRSTKMQIMSREIEMLKSKEGILKAANDILQERIV 173 479**********************978****************************************************99886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.8E-33 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.19E-27 | 1 | 75 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 28.497 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.87E-36 | 2 | 71 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.6E-25 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.4E-23 | 10 | 56 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.6E-25 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.6E-25 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.9E-22 | 84 | 172 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 12.822 | 87 | 178 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MARGKVQMRR IENPVHRQAT FCKRRMGLLK KAKELSVLCD ADIGVVVFSP HGKIYELATN 60 GNMQGLIERY KSKLPEAQVE SNEQNIPLVT QQDVLLLRQE VDLLQNSLRY MYGERDINNM 120 NLGELQSLES NLEVWVNNIR STKMQIMSRE IEMLKSKEGI LKAANDILQE RIVEQSSILD 180 PGGNMMIPQV PFQLTTESNY YF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. | |||||
UniProt | Probable transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012612 | 2e-80 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020194477.1 | 1e-120 | MADS-box transcription factor 26-like | ||||
Refseq | XP_020194478.1 | 1e-120 | MADS-box transcription factor 26-like | ||||
Swissprot | A2YQK9 | 2e-76 | MAD26_ORYSI; MADS-box transcription factor 26 | ||||
Swissprot | Q0J8G8 | 2e-76 | MAD26_ORYSJ; MADS-box transcription factor 26 | ||||
TrEMBL | A0A0E0KR13 | 1e-147 | A0A0E0KR13_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC04G11660.1 | 1e-147 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1491 | 36 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71692.1 | 1e-58 | AGAMOUS-like 12 |
Publications ? help Back to Top | |||
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