PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC04G10470.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

FAR1

Protein Properties

Length: 538aa MW: 57115.5 Da PI: 10.0143

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC04G10470.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	76.7	4.5e-24	214	302	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fY+ Y+ +vGF+vrk++ +ksk++geit+r+f Cs+eg+r++ k+ ++ + + +rtgC+a+l+++++k +k ev+ ++ HnH+l+ OPUNC04G10470.1 214 EFYRYYGWKVGFNVRKEYANKSKKTGEITSRKFACSREGYRANVKRG--NHMVPMPDSRTGCNAHLVIRRKKpGAKLEVYAFQPRHNHPLF 302 6****************************************9988..9999***************9**************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.9E-20	214	302	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 538 aa Download sequence Send to blast
MSSSAEPPPP EQPPTPAPAL ASPPPQPAAS GNEAAAPPKP NPPITPTPAR NASAAAPSGS 60 LATAAPVPSR KPPGATSVAA VAAPWKASGV AATGVLLRKP PGTTAPVAAR NIPATTAASR 120 SATRATTTTA VSRRPAAAAA AAAVASRIPL RAAAAATTTA ASRNPLTGAA AATATATATV 180 AAVGSGGFRA APTRPEEYTP RMGMEFESEH EAYEFYRYYG WKVGFNVRKE YANKSKKTGE 240 ITSRKFACSR EGYRANVKRG NHMVPMPDSR TGCNAHLVIR RKKPGAKLEV YAFQPRHNHP 300 LFATSCMPNP LQPNVVHWTT LPDAVTPPDL LMDGGEEFKA CINLYEEETE FLTSWDAMIK 360 NIMDKSSGTT AKESKKKGQK NKIQSRNCIE KGLRKKQKFH SEQPAEYALL DGSQSGNMFQ 420 VFFANFFSQI AFEGPPNTSP LGTQTPTYKT YRGIDLSSPM GPISYDEMHS GLDPTFTTHL 480 GFATYHTSQV SSSSPHNQLA GNASRCNHNL TYVIPPSLFV FHYPREVDLC TGLPGLSG

Sequence ? help Back to Top

Protein Sequence Length: 538 aa Download sequence Send to blast

MSSSAEPPPP EQPPTPAPAL ASPPPQPAAS GNEAAAPPKP NPPITPTPAR NASAAAPSGS  60
LATAAPVPSR KPPGATSVAA VAAPWKASGV AATGVLLRKP PGTTAPVAAR NIPATTAASR  120
SATRATTTTA VSRRPAAAAA AAAVASRIPL RAAAAATTTA ASRNPLTGAA AATATATATV  180
AAVGSGGFRA APTRPEEYTP RMGMEFESEH EAYEFYRYYG WKVGFNVRKE YANKSKKTGE  240
ITSRKFACSR EGYRANVKRG NHMVPMPDSR TGCNAHLVIR RKKPGAKLEV YAFQPRHNHP  300
LFATSCMPNP LQPNVVHWTT LPDAVTPPDL LMDGGEEFKA CINLYEEETE FLTSWDAMIK  360
NIMDKSSGTT AKESKKKGQK NKIQSRNCIE KGLRKKQKFH SEQPAEYALL DGSQSGNMFQ  420
VFFANFFSQI AFEGPPNTSP LGTQTPTYKT YRGIDLSSPM GPISYDEMHS GLDPTFTTHL  480
GFATYHTSQV SSSSPHNQLA GNASRCNHNL TYVIPPSLFV FHYPREVDLC TGLPGLSG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012612	0.0	CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBank	CR855155	0.0	CR855155.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: H0525E10, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025880889.1	1e-132	protein FAR1-RELATED SEQUENCE 12
Refseq	XP_025880890.1	1e-132	protein FAR1-RELATED SEQUENCE 12
Refseq	XP_025880891.1	1e-132	protein FAR1-RELATED SEQUENCE 12
Refseq	XP_025880892.1	1e-132	protein FAR1-RELATED SEQUENCE 12
Refseq	XP_025880893.1	1e-132	protein FAR1-RELATED SEQUENCE 12
Refseq	XP_025880894.1	1e-132	protein FAR1-RELATED SEQUENCE 12
Refseq	XP_025880895.1	1e-132	protein FAR1-RELATED SEQUENCE 12
Refseq	XP_025880896.1	1e-132	protein FAR1-RELATED SEQUENCE 12
Refseq	XP_025880897.1	1e-132	protein FAR1-RELATED SEQUENCE 12
Refseq	XP_025880898.1	1e-132	protein FAR1-RELATED SEQUENCE 12
TrEMBL	A0A0E0KQJ3	0.0	A0A0E0KQJ3_ORYPU; Uncharacterized protein
STRING	OPUNC04G10470.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15895	9	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	1e-17	FAR1 family protein