PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC04G09570.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 520aa    MW: 54780.4 Da    PI: 7.8876
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC04G09570.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix55.91.1e-17132221186
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                      +Wt+  +  L++ ++++ e+l+rg+l++ +We+v++++     +    +s +qCk+k++nl+kryk + ++  +  + ++s++p+f+++e
  OPUNC04G09570.1 132 EWTDGAISSLLDSYTDRFEQLNRGNLRGRDWEDVAAAVtdgqGKSSGGKSVEQCKNKIDNLKKRYKVECQRLAGSGASAVSHWPWFKKME 221
                      5*************************************6655344446899***************888887777677888********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.8E-20130223No hitNo description
Gene3DG3DSA:3.40.1160.102.3E-71277513IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B32.837278514IPR015963Uridylate kinase, bacteria
SuperFamilySSF536336.28E-55278513IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042547.30E-114281514No hitNo description
PfamPF006961.2E-18281493IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0046939Biological Processnucleotide phosphorylation
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MASCDDDFGL LGDGPVPEAA AASQAAPPPP PPQQQQAQTF CFGDAASVAA GAGPFAPMGH  60
EEGNHSAERG KAAAHHSKRG RDRTEEFSDG GEYCSYINSG GGGGGVGKKG RGGGGGGVAA  120
AGSSEYRKDR EEWTDGAISS LLDSYTDRFE QLNRGNLRGR DWEDVAAAVT DGQGKSSGGK  180
SVEQCKNKID NLKKRYKVEC QRLAGSGASA VSHWPWFKKM EQIVGNSSSP ASSKALVASD  240
DDNKPRQPQQ HSSKRHAPSG SSTPTFGGGS RLAPLSNPKW KRVLLKIGGT ALAGAPPQNV  300
DPKVIMLIAR EVQVACRHGV EVSIVVGGRN IFCGDTWVSA TGTDRASTYP IGMMASVMNA  360
VLLQASLEKI GVETRVQTAL MMQEVAEPYI RRRAIRHLEK GRVVIFAGIG AGIGNPLFTT  420
DTAAALRASE INADVVLKGT AGDDDYGCPP RGNNNPPFEH ISFRELAARG FSRMDMTAIT  480
CCQENNIPVV IFNMLEPGNI SKAICGDQVG TLVDQSGRIT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1z9d_A1e-602785135238uridylate kinase
1z9d_B1e-602785135238uridylate kinase
1z9d_C1e-602785135238uridylate kinase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1087570.0AK108757.1 Oryza sativa Japonica Group cDNA clone:002-150-G02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637195.10.0uncharacterized protein LOC4335753
TrEMBLA0A0E0KQ690.0A0A0E0KQ69_ORYPU; Uncharacterized protein
STRINGOPUNC04G09570.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19353442
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.11e-157Trihelix family protein