PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC04G09190.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 283aa    MW: 29126.8 Da    PI: 4.3477
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC04G09190.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.5e-184798156
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                     ++y GVr+++ +gr++AeIrdp +   + r++lg+f+taeeAa a+++a+++l+g+
  OPUNC04G09190.1 47 TRYLGVRRRP-WGRYAAEIRDPAT---KERHWLGTFDTAEEAAVAYDRAARSLRGA 98
                     5799******.**********843...4*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.59E-3047106No hitNo description
PROSITE profilePS5103221.56248105IPR001471AP2/ERF domain
PfamPF008471.0E-104897IPR001471AP2/ERF domain
SMARTSM003803.1E-3248111IPR001471AP2/ERF domain
SuperFamilySSF541714.38E-2148105IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.0E-2848105IPR001471AP2/ERF domain
PRINTSPR003671.5E-84960IPR001471AP2/ERF domain
PRINTSPR003671.5E-87187IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0010030Biological Processpositive regulation of seed germination
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MMNFSSYFYS SSTAVAAAGG GGGEKKSSSA SASKKKQQAA AGEGNQTRYL GVRRRPWGRY  60
AAEIRDPATK ERHWLGTFDT AEEAAVAYDR AARSLRGARA RTNFAYPDLP PGSSITPYLS  120
PDLTADGSDQ LLQPFYANPS AAAAAALPTP AAAVAGGVEF GSEYMSMYGG VDMSSLMDDI  180
PMPDDLPPTM TGGDDYSSGG SGGGMVDVTM YGGGNGGSGG GWCDASDFTS YSSSSPAPAA  240
AGSHGMYFEE GYVHSPLFSP MPAVDDAGAD GFQLGGSSSS YYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-1849104662ATERF1
3gcc_A5e-1849104662ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00509DAPTransfer from AT5G13910Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL7316420.0AL731642.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0014D23, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635285.11e-115ethylene-responsive transcription factor LEP
TrEMBLA0A0E0KQ180.0A0A0E0KQ18_ORYPU; Uncharacterized protein
STRINGOPUNC04G09190.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18853397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.17e-24ERF family protein