PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC04G08530.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 305aa    MW: 33945.6 Da    PI: 8.6505
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC04G08530.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF43.63.7e-141150241
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41
                     rie+  +r + f kR++g+ KKAeEL vLCda v  +++s
  OPUNC04G08530.1 11 RIEDRVRRGICFRKRLAGLEKKAEELAVLCDAHVGFVVIS 50
                     8**********************************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.2E-12264IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.998250IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.02E-14354IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-10424IPR002100Transcription factor, MADS-box
PfamPF003198.6E-171152IPR002100Transcription factor, MADS-box
CDDcd001203.58E-151264No hitNo description
PRINTSPR004043.5E-102439IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-103960IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MGRRGRVVLR RIEDRVRRGI CFRKRLAGLE KKAEELAVLC DAHVGFVVIS CSDVDAHPHH  60
FAAPATGFDT LVILVYWMVR KEWNNHIFNH DRKSWSQLIV AMTAGAKQWA PAPAGAKVLH  120
LVAWNIENIV ERYEHSLAAQ KGVHGRRILE KSKSKDFQVP KETILDKGPI NDDMRPIDET  180
DISTLNMDQT IQIERLLEDE LGWIRARKVV ADRIARLQKK VQRKPATAET ESNSTEMPSD  240
HEKKQVGGGS QQSAEEEVEV VLSPSLSLGT GGRGDGGGGS AAEQRHRTPP AVDLNVPCRD  300
AGQLQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1270278GGRGDGGGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR8550971e-88CR855097.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0075F02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637115.11e-109truncated transcription factor CAULIFLOWER D-like isoform X1
TrEMBLA0A0E0KPT50.0A0A0E0KPT5_ORYPU; Uncharacterized protein
STRINGOPUNC04G08530.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1509655
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30260.12e-12AGAMOUS-like 79