PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC04G08500.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | B3 | ||||||||
Protein Properties | Length: 199aa MW: 20788.5 Da PI: 6.2649 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 36.7 | 7.2e-12 | 80 | 157 | 4 | 87 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 ++ +s+v ++v+p++fa +k +++ t +grsW +++ ++++ l++GW++F+ +n+L+ gD +vF+l++ OPUNC04G08500.1 80 IMCKSHVQPPFQVVVPRSFAPLLPSK-TTP--AT-LAWRGRSWGMRF--TGGRLIQRLEAGWRGFAVDNDLRLGDGCVFELVDG 157 677899999999********544433.344..33.44699*******..88888899***********************8864 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 9.22E-16 | 74 | 158 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.4E-15 | 74 | 177 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.34E-13 | 75 | 176 | No hit | No description |
PROSITE profile | PS50863 | 12.167 | 77 | 178 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0095 | 77 | 178 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.9E-9 | 78 | 157 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MASDPTDLRC SSPECSGDAG AEDPAAALDA AEKSGGGGGG GGGEVAAGTE TVAPPRPPEP 60 EKVPRHGVLP LLGKPYFTCI MCKSHVQPPF QVVVPRSFAP LLPSKTTPAT LAWRGRSWGM 120 RFTGGRLIQR LEAGWRGFAV DNDLRLGDGC VFELVDGGGG GDGEHERVEF RVQVLRAEIP 180 ARIRGRAGGY TSATPIVID |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK119999 | 0.0 | AK119999.1 Oryza sativa Japonica Group cDNA clone:002-184-H05, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015635251.1 | 1e-98 | B3 domain-containing protein Os04g0386900 | ||||
Swissprot | Q7XLP4 | 1e-99 | Y4869_ORYSJ; B3 domain-containing protein Os04g0386900 | ||||
TrEMBL | A0A0E0KPT0 | 1e-139 | A0A0E0KPT0_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC04G08500.1 | 1e-140 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8954 | 35 | 45 |
Publications ? help Back to Top | |||
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