PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC04G08160.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 350aa MW: 36381.9 Da PI: 4.9463 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.3 | 1.8e-10 | 133 | 177 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 Er+RR r+++++ eLr l+P+ +K++Ka+i Av Y+k+Lq OPUNC04G08160.1 133 IVSERKRRVRMKEKLYELRALVPNI-----TKMDKASIIADAVVYVKDLQ 177 568*********************7.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.06E-15 | 124 | 195 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.58E-13 | 124 | 178 | No hit | No description |
PROSITE profile | PS50888 | 15.294 | 127 | 176 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.4E-15 | 129 | 192 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.2E-12 | 133 | 182 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.5E-8 | 133 | 177 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0034756 | Biological Process | regulation of iron ion transport | ||||
GO:0071281 | Biological Process | cellular response to iron ion | ||||
GO:0071369 | Biological Process | cellular response to ethylene stimulus | ||||
GO:0071732 | Biological Process | cellular response to nitric oxide | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 350 aa Download sequence Send to blast |
MEHHHLLQLS PPASHLMMSP SFFDVGVGGA AGVFADVGGD WMEDLMHLGE LFGVGDDNNA 60 GVDAAVGGGG GDDRMQEWQN CEGGGSPDQP SCGDGDGDGD VSPRDGELAC RDDGDGDGDN 120 SATRKRRDRS KTIVSERKRR VRMKEKLYEL RALVPNITKM DKASIIADAV VYVKDLQAHA 180 RKLKEEVAVL EARPRPPSAA VTRPQKQPRR AVAALAKAAA PARDIDGAAA AAVTAAHGAR 240 VTHVGAAQVG EGRFFVTVEC EPAAAAAASG GGGGGGVAAP LCAAVESLSC FAVESSTVGC 300 SPDRVVVTLT LKVSEAEEDV STISECTVKL WMMAALLKEG FRPQPTVEIS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 124 | 139 | KRRDRSKTIVSERKRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT835040 | 1e-151 | CT835040.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA119K17, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015634338.1 | 1e-142 | transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR | ||||
TrEMBL | A0A0E0KPP4 | 0.0 | A0A0E0KPP4_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC04G08160.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5546 | 30 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28160.1 | 4e-31 | FER-like regulator of iron uptake |