PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC04G05760.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MIKC_MADS
Protein Properties Length: 250aa    MW: 28947.7 Da    PI: 8.8828
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC04G05760.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF83.41.4e-26959151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     kri+n++nrqvtfskRr g++KKA EL vLCda+v +i+fs tg+ly+++s
  OPUNC04G05760.1  9 KRIDNTTNRQVTFSKRRGGLMKKARELAVLCDADVGLIVFSCTGRLYDFAS 59
                     79***********************************************86 PP
2K-box45.43.5e-161432083499
            K-box  34 eqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                       +R+llGe+L++ ++++Lq L++q+e sl +iR+kK  l+ +  +el+kk + ++++n +L+kkl+
  OPUNC04G05760.1 143 FLRQLLGEELSNFTVRDLQLLQNQVEMSLHSIRNKKGSLVQKDNSELRKKFNIAHQRNIELHKKLN 208
                      579************************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.286161IPR002100Transcription factor, MADS-box
SMARTSM004328.5E-39160IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.59E-30293IPR002100Transcription factor, MADS-box
CDDcd002651.93E-40282No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004048.5E-28323IPR002100Transcription factor, MADS-box
PfamPF003195.0E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004048.5E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004048.5E-283859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129710.569123213IPR002487Transcription factor, K-box
PfamPF014865.1E-13132207IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MGRGKIAIKR IDNTTNRQVT FSKRRGGLMK KARELAVLCD ADVGLIVFSC TGRLYDFASS  60
RVFLFVSMKS IIERYQEAGE EHCRLLNPMS EAKFWQREVT TLRQQVQNLH HNNSFYLSAN  120
YLTENSAYYL IKINQNEDEN EIFLRQLLGE ELSNFTVRDL QLLQNQVEMS LHSIRNKKGS  180
LVQKDNSELR KKFNIAHQRN IELHKKLNSG ENTSSEQVTR SSKDPGESST PRDSRVCIDL  240
ELSQQRVEDE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-19182176MEF2C
5f28_B2e-19182176MEF2C
5f28_C2e-19182176MEF2C
5f28_D2e-19182176MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1029271e-101AK102927.1 Oryza sativa Japonica Group cDNA clone:J033114E21, full insert sequence.
GenBankAY1776951e-101AY177695.2 Oryza sativa (japonica cultivar-group) transcription factor MADS25 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635120.11e-139MADS-box transcription factor 25
SwissprotQ84NC51e-140MAD25_ORYSJ; MADS-box transcription factor 25
TrEMBLA0A0E0KNV00.0A0A0E0KNV0_ORYPU; Uncharacterized protein
STRINGOPUNC04G05760.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61435130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.15e-62AGAMOUS-like 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  3. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]