PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC04G04120.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 334aa    MW: 36798.2 Da    PI: 8.3163
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC04G04120.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.91.8e-161462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l++ ++++G+g +W + +++ g++R++k+c++rw++yl
  OPUNC04G04120.1 14 KGPWSPEEDAKLKEFIEKHGTGgNWIALPQKAGLRRCGKSCRLRWLNYL 62
                     79*********************************************97 PP

2Myb_DNA-binding35.62.1e-1169111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +T+ Ed  +   ++  G++ W+ Ia+ ++ gRt++++k++w++
  OPUNC04G04120.1  69 GEFTEHEDRVICSMFASIGSR-WSIIASQLP-GRTDNDIKNYWNT 111
                      78*******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.884966IPR017930Myb domain
SuperFamilySSF466892.29E-2711109IPR009057Homeodomain-like
SMARTSM007179.4E-131364IPR001005SANT/Myb domain
PfamPF002491.0E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.9E-241569IPR009057Homeodomain-like
CDDcd001675.34E-101662No hitNo description
PROSITE profilePS5129415.75967117IPR017930Myb domain
SMARTSM007175.5E-1167115IPR001005SANT/Myb domain
PfamPF002491.8E-969111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-2270117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MGRAPCCDKN NVKKGPWSPE EDAKLKEFIE KHGTGGNWIA LPQKAGLRRC GKSCRLRWLN  60
YLRPNIKHGE FTEHEDRVIC SMFASIGSRW SIIASQLPGR TDNDIKNYWN TKLKKKLLGP  120
TAAAAAAPPR MQRQQSHHHR SSLLLPNSPS LNPGGGYPGF FSGAGGFHHQ EPAMPPTLTL  180
PTTQEFMLGT HSGLPMVSAS ALLNHLHGAS HHQLLVKEEN SNMIVFGSDQ QSCSSSDGLA  240
PHSSHHHGNR EFILDGYSYG GGYNNSCIDH VDNNKLFQHQ QDQAQEQQQL VYNYDEIKQL  300
LMNTSTTNNN NAGQDHGGSM EAGLIGSQGK VTMM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-26141177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0962051e-131FP096205.1 Phyllostachys edulis cDNA clone: bphylf043l07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824972.11e-127transcription factor RAX2-like
TrEMBLA0A0E0KN990.0A0A0E0KN99_ORYPU; Uncharacterized protein
STRINGOPUNC04G04120.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.11e-69myb domain protein 36