PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G38520.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 376aa    MW: 40244.2 Da    PI: 7.1571
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G38520.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.15.7e-31193251259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY+ eHnh+
  OPUNC03G38520.1 193 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCMARKQVERSRSDPNMLVITYTAEHNHP 251
                      699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081133.247187253IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-30190253IPR003657WRKY domain
SuperFamilySSF1182901.7E-26191253IPR003657WRKY domain
SMARTSM007744.3E-38192252IPR003657WRKY domain
PfamPF031068.3E-26194251IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MDMMEEEAAN AATAAQAAAA AAGDLADVVA RANARAFLVS TPHHHHSPLH PLPMPPPHQY  60
YPAAQITIPY LHQDAAPELR RPTTIAYADA AVAVPFEAGP PSTVVDSYHL TPGGGGYGMP  120
RPLAVQISQH ALCSGGGGAG AADDGEDAIR ISPLTPSAHH QMMKRKNEVK KVVCIPAPPA  180
TSGRGGGGEV IPSDLWAWRK YGQKPIKGSP YPRGYYRCSS SKGCMARKQV ERSRSDPNML  240
VITYTAEHNH PWPMQRNLLA GYARSHHTHA TSRNKQQQQQ TIFSDPAALM ITSSSSSSSS  300
PCNLYADVLG GQQAAPNMMM TTEAGTGPSA ADEVFAELEE LEPDNPTMIN ANMVYSMTTS  360
SSRPGVSSYD HQWHKF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-23166253279Disease resistance protein RRS1
5w3x_D1e-23166253279Disease resistance protein RRS1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1097950.0AK109795.1 Oryza sativa Japonica Group cDNA clone:002-147-E06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630180.11e-170uncharacterized protein LOC4334831
TrEMBLA0A0E0KLQ20.0A0A0E0KLQ2_ORYPU; Uncharacterized protein
STRINGOPUNC03G38520.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134662832
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.18e-55WRKY DNA-binding protein 35