PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G37030.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 349aa    MW: 36844.5 Da    PI: 4.4318
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G37030.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM43.21.2e-1361463128
              NAM   3 pGfrFhPtdeelvveyLkkkvegkk.....leleevikevdiykvePwdLpk.......kvkaeekewyfFskrdkkyatgkrknratksgy.. 82 
                      +G+ F+P+d++l + yL+  +++++       +++ ++ +d+y++ P +L +       + +++ + wy F++ +   ++g rk r++ sg   
  OPUNC03G37030.1   6 KGLVFSPSDDQLTDGYLRSYLARTSlddlpSAAASYFHVADVYSFPPDQLVAglapapgTGDGDGRVWYVFTPVRVLGSRGARKARTVGSGGgg 99 
                      6999****************99999777643333459999**********7456776654455778********************87754333 PP

              NAM  83 ...WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         W+a g  k+v+   ++  g  + + +  ++a+  +k  W+m ey++
  OPUNC03G37030.1 100 gecWHAEGGPKDVKG--SAGGGKLQKFSYKIKTASGVVKPGWLMVEYSF 146
                      445**********88..555677788999988899999*********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.15E-244160IPR003441NAC domain
PROSITE profilePS5100519.6684160IPR003441NAC domain
PfamPF023657.5E-97145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MAEIGKGLVF SPSDDQLTDG YLRSYLARTS LDDLPSAAAS YFHVADVYSF PPDQLVAGLA  60
PAPGTGDGDG RVWYVFTPVR VLGSRGARKA RTVGSGGGGG ECWHAEGGPK DVKGSAGGGK  120
LQKFSYKIKT ASGVVKPGWL MVEYSFPGSD HLALCKVYRS PRTSRYGAPS PPSSAASSPS  180
RALPPVSSGR KRRAEESDHP EAPASSAPPA PEQHQDVDAA GAEPDQGYLS TDQLESIAAL  240
VQEHEGDEEF CKSLGFDERA DPQCWNNFFL SALEEIRQPE TAAAAVEPGP CPEYEEHDEL  300
VVSGLPPCTA TASSHAYDSA TAELVNLSDK EFYDILFSSD EQDGAAVAG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1333390.0AC133339.3 Oryza sativa chromosome 3 BAC OSJNBa0078D06 genomic sequence, complete sequence.
GenBankAC1337780.0AC133778.4 Oryza sativa chromosome 3 BAC OSJNBb0027B08 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0KL410.0A0A0E0KL41_ORYPU; Uncharacterized protein
STRINGOPUNC03G37030.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62801545