PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC03G36200.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Dof

Protein Properties

Length: 412aa MW: 40940.2 Da PI: 9.4632

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC03G36200.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.9	1.1e-38	117	177	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e lkcprC+stntkfCy+nnyslsqPr+fCk+CrryWt+GGalrnvPvGgg+r+nk+++ OPUNC03G36200.1 117 PEPGLKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRTK 177 56789*****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	9.0E-39	101	175	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.8E-32	121	175	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.609	121	175	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	123	159	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence Send to blast
MVFSSVPAVY LDPPNWNQQQ QQAHHGQLPS GNGGGGGGGG GGVDAHHHHH HQLPPMPPHH 60 GGLMAPRPDM VAAAVAASGG GGGVAGSGGG GGGPTGGSAV RPGSMTERAR LAKIPQPEPG 120 LKCPRCESTN TKFCYFNNYS LSQPRHFCKT CRRYWTRGGA LRNVPVGGGC RRNKRTKSSK 180 SSSSSAASAS ATGGTSSSTS STATGGSSGA AAAMMPPQAQ LPFLASLHHP LGGGDHYSTG 240 ASRLGFPGLS SLDPVDYQLG GGGAASAATI GLEQWRLPQI QQFPFFSRND AMPPPMSGIY 300 PFDAEGAADA AGFAGQLLAG TKVPGSSGLI TQLASVKMED NNAQSTAMNS SPREFLGLPG 360 NLQFWGGGNG AGGGNGGNAS GGSGAGVAPG GGGGGGWVDL SGFNSSSSGN IL

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence Send to blast

MVFSSVPAVY LDPPNWNQQQ QQAHHGQLPS GNGGGGGGGG GGVDAHHHHH HQLPPMPPHH  60
GGLMAPRPDM VAAAVAASGG GGGVAGSGGG GGGPTGGSAV RPGSMTERAR LAKIPQPEPG  120
LKCPRCESTN TKFCYFNNYS LSQPRHFCKT CRRYWTRGGA LRNVPVGGGC RRNKRTKSSK  180
SSSSSAASAS ATGGTSSSTS STATGGSSGA AAAMMPPQAQ LPFLASLHHP LGGGDHYSTG  240
ASRLGFPGLS SLDPVDYQLG GGGAASAATI GLEQWRLPQI QQFPFFSRND AMPPPMSGIY  300
PFDAEGAADA AGFAGQLLAG TKVPGSSGLI TQLASVKMED NNAQSTAMNS SPREFLGLPG  360
NLQFWGGGNG AGGGNGGNAS GGSGAGVAPG GGGGGGWVDL SGFNSSSSGN IL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012611	0.0	CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015628807.1	1e-163	dof zinc finger protein DOF2.4 isoform X2
TrEMBL	A0A0E0KKU0	0.0	A0A0E0KKU0_ORYPU; Uncharacterized protein
STRING	OPUNC03G36200.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4893	29	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02460.1	1e-42	Dof family protein