PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G33070.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family FAR1
Protein Properties Length: 514aa    MW: 56136.9 Da    PI: 8.5639
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G33070.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR125.35.2e-0843755989
             FAR1 59 rtgCkaklkvkkek..dgkwevtkleleHnHel 89
                     +  C+a+++v k++   gkw+v+kl+ eHnHe+
  OPUNC03G33070.1 43 EERCRAMMEVVKKDavGGKWRVSKLVVEHNHEV 75
                     568*****99888889***************97 PP
2FAR127.51e-08105167248
             FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk................t 48 
                      fY  Y+++vGF+ r+ ++++s  ng +++++f Cs+  +++++ k+                 
  OPUNC03G33070.1 105 FYYGYGERVGFKARTGSNRRSVGNGVMIMQRFLCSRGNYANRRYKAnglgelkeeevqegaaG 167
                      9***********************************999999988877777765555555441 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.4E-54375IPR004330FAR1 DNA binding domain
PfamPF031017.9E-6105166IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    Send to blast
MADHAAAAAK VADAVCGDPS LRQAGAAGDD EAAAAAGVGV GAEERCRAMM EVVKKDAVGG  60
KWRVSKLVVE HNHEVEVAPC GEGEVAAAVP VMGMEFDSVH AAKGFYYGYG ERVGFKARTG  120
SNRRSVGNGV MIMQRFLCSR GNYANRRYKA NGLGELKEEE VQEGAAGKRK RGANNKSRNR  180
NLVKNHSEVI EVESSAEKGV GAAVPNNGQE ARRMRGSKRG RTKMGVIEKD GKSVVELEAE  240
KEDEVVAQNG DDNGDDVEEQ KGEGEEEMEE EVQVEVKEKR GRGRPRKADK EGNALQARVL  300
RELGLRASQY TNEERKKIVS KYLSKRQSRP VSARPAKIAS RQALAERRKR GDGGRFLASE  360
GLTPLQQPLE RRSKRLEKQN LKKEDKGESL PDPEEAEVPL RVDPPTISND IPNHLRTPTS  420
QFLAPSHIMQ APYVAQQFGL SSLQGFPGIS PFGQEPAPAP LQQPHLQQPP FHSGPQIPQA  480
PPDIQSLQFL SSNPQLGHQA TDQSQYTIPV WDFL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1278286KRGRGRPRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0847480.0AC084748.11 Oryza sativa chromosome 3 BAC OSJNBa0010I09 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630920.10.0protein FAR1-RELATED SEQUENCE 4 isoform X1
TrEMBLA0A0E0KJN70.0A0A0E0KJN7_ORYPU; Uncharacterized protein
STRINGOPUNC03G33070.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP148331318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07500.14e-09FAR1 family protein