PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G32650.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 667aa    MW: 69704.9 Da    PI: 7.0764
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G32650.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2392e-12310366155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV++++++gr++A+++d  ++  g  rk  + g ++ +e+Aa+a++ a++k++g
  OPUNC03G32650.1 310 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqTRKGRQ-GGYDMEEKAARAYDLAALKYWG 366
                      78*******************77776664346655.77******************98 PP
2AP247.83.5e-15409460155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV+++++ grW A+I  +s    +k  +lg+f t eeAa+a++ a+ k++g
  OPUNC03G32650.1 409 SIYRGVTRHHQHGRWQARIGRVSG---NKDLYLGTFSTQEEAAEAYDVAAIKFRG 460
                      57****************999754...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.25E-17310374No hitNo description
SuperFamilySSF541712.62E-14310375IPR016177DNA-binding domain
PfamPF008471.2E-9310366IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-12311375IPR001471AP2/ERF domain
SMARTSM003808.3E-23311380IPR001471AP2/ERF domain
PROSITE profilePS5103217.359311374IPR001471AP2/ERF domain
PRINTSPR003674.0E-6312323IPR001471AP2/ERF domain
CDDcd000183.68E-23409470No hitNo description
PfamPF008471.8E-10409460IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-18409469IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.0E-18410468IPR001471AP2/ERF domain
SMARTSM003803.9E-34410474IPR001471AP2/ERF domain
PROSITE profilePS5103219.137410468IPR001471AP2/ERF domain
PRINTSPR003674.0E-6450470IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007276Biological Processgamete generation
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0042127Biological Processregulation of cell proliferation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 667 aa     Download sequence    Send to blast
MASGGGSSSS SSIAATAGGV GSSWLGFSLS PHMATHCAGV EDVGHNHHHH HHHVHQHQQQ  60
QHGGGLFYNP AAVASSFYYG GGHDAVVTSA AAAGNGAGSY YAAGFSSMPL KSDGSLCIME  120
ALRGGDQEQQ GVVVSASPKL EDFLGAGPAM ALSLDNSAFY YGGHGHHQEH AQDGGGGFLQ  180
CAVIPSAGAG HDAAYAHAAL VHDQSAAAMA AGWAAMHGGY DITNAADDVC TAGPIIPTGG  240
HLHPLTLSMS SAGSQSSCVT VQAAATGAPH GGEPYMAMDA VSKKRGGTDR AGQKQPVHRK  300
SIDTFGQRTS QYRGVTRHRW TGRYEAHLWD NSCKKEGQTR KGRQGGYDME EKAARAYDLA  360
ALKYWGPSTH INFPLEDYQE ELEEMKNMSR QEYVAHLRRK SSGFSRGASI YRGVTRHHQH  420
GRWQARIGRV SGNKDLYLGT FSTQEEAAEA YDVAAIKFRG LNAVTNFDIT RYDVDKILES  480
NTLLPGELAR RKGKDGDGGP AAGAMVESGA VADAAAALVQ AGNVAEWKMA AALPSAARTG  540
GDEQQHGHSG GHHHHQHHDL LPSDAFSVLH DIVSTVDTAG ADSGTRGGNA SAVHMSMAAT  600
SLGNSREQSP DRGVGGGVLA TLFAKPAASK LYSPVPLNSW ASPSPAAQAR PGVSIAHLPM  660
FAAWTDA
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00088SELEXTransfer from AT4G37750Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2417120.0AK241712.1 Oryza sativa Japonica Group cDNA, clone: J065197H24, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025879550.10.0AP2-like ethylene-responsive transcription factor CRL5 isoform X2
SwissprotQ84Z021e-164CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A0E0KJJ00.0A0A0E0KJJ0_ORYPU; Uncharacterized protein
STRINGOPUNC03G32650.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94838133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-138AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]