PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC03G32270.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | Dof | ||||||||
Protein Properties | Length: 349aa MW: 35673.3 Da PI: 9.803 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 121 | 4.3e-38 | 65 | 122 | 3 | 60 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 ++ l+cprC+s+ntkfCyynny+l+qPr+fCk+CrryWtkGGalrnvP+Ggg+rk + OPUNC03G32270.1 65 QAPLRCPRCNSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKPRP 122 66789**************************************************875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 8.4E-32 | 67 | 121 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 3.0E-24 | 68 | 117 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.096 | 68 | 122 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 70 | 106 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 349 aa Download sequence Send to blast |
MDQLKGASAL NHASLPVVLQ PIVSNPSPTS SSSTSSRSSA QATQQRSSSA TSSPHGQGQG 60 GAAEQAPLRC PRCNSSNTKF CYYNNYNLTQ PRHFCKTCRR YWTKGGALRN VPIGGGCRKP 120 RPMPAPVAKP PMSCKAAPPL GLGVGVGGGP VSWASGQQAA TAHLMALLNS ARGVQGHGGS 180 NVHRLLGLDT MGHLQILPGA PNAGAGTAAS LWPQTAPRPV TPPPHMDSQL GMGTLGHHDV 240 LSSLGLKLPS SASSSPAASY YSDQLHAVVS NAGRPQAYDV ASSSLPCTTA VTSLPSALSS 300 VSAAAPTSNT VGMDLPPVSL AAPEMQYWNG PAAMSVPWPD LPTPNGAFP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC099043 | 0.0 | AC099043.6 Oryza sativa chromosome 3 BAC OSJNBa0079B15 genomic sequence, complete sequence. | |||
GenBank | AK063380 | 0.0 | AK063380.1 Oryza sativa Japonica Group cDNA clone:001-114-F11, full insert sequence. | |||
GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015629418.1 | 0.0 | dof zinc finger protein 4-like | ||||
TrEMBL | A0A0E0KJE5 | 0.0 | A0A0E0KJE5_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC03G32270.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7710 | 31 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07640.1 | 2e-30 | Dof family protein |