PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OPUNC03G30420.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 270aa MW: 28822.4 Da PI: 6.9975 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 47.8 | 2e-15 | 165 | 201 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C+nCg ++ Tp +Rrgp g+++LCnaCGl+++ kg+ OPUNC03G30420.1 165 CQNCGISSrlTPAMRRGPAGPRSLCNACGLMWANKGT 201 **********************************997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00979 | 1.0E-9 | 32 | 67 | IPR010399 | Tify domain |
PROSITE profile | PS51320 | 15.548 | 32 | 67 | IPR010399 | Tify domain |
Pfam | PF06200 | 7.5E-13 | 34 | 66 | IPR010399 | Tify domain |
Pfam | PF06203 | 5.5E-16 | 94 | 134 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 13.493 | 94 | 136 | IPR010402 | CCT domain |
SMART | SM00401 | 1.3E-10 | 159 | 213 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.09E-10 | 162 | 212 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 7.8E-14 | 163 | 203 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.32E-13 | 165 | 211 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 165 | 192 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 3.8E-13 | 165 | 201 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 270 aa Download sequence Send to blast |
MAAEPPADGR DPPADDGAAG DSGGGGAAEA LLSAASEQLT LVYQGEVYVF DPVPPQKVQA 60 VLLVLGGSDM PPGLVSMAVP STFDEKSTTV AARRVASLMR FREKRKERCF DKKIRYSVRK 120 EVAQKMKRRK GQFAGRADFG DGSCSSAPCG STANGEDDHI RETHCQNCGI SSRLTPAMRR 180 GPAGPRSLCN ACGLMWANKG TLRSPLNAPK MTAQHPADLS KMGDTDDSKS NLHAEHNQTT 240 TKTDSEMVPE QEQKADVLPP TKEEDSMATS |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK288076 | 0.0 | AK288076.1 Oryza sativa Japonica Group cDNA, clone: J075163P08, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015632019.1 | 1e-171 | GATA transcription factor 19 isoform X1 | ||||
Swissprot | Q0DNU1 | 1e-172 | GAT19_ORYSJ; GATA transcription factor 19 | ||||
TrEMBL | A0A0E0KIP9 | 0.0 | A0A0E0KIP9_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC03G30420.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3460 | 37 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G51600.2 | 3e-56 | ZIM-LIKE 2 |