PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G29870.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 346aa    MW: 37987.6 Da    PI: 6.247
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G29870.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.45.5e-092532872155
                      HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
         Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                      + +yps+ e+  LA+++gL+++q+ +WF N+R ++
  OPUNC03G29870.1 253 RWPYPSEMEKIALAESTGLEQKQINNWFINQRKRH 287
                      669*****************************885 PP
2ELK32.42.1e-11208228222
              ELK   2 LKhqLlrKYsgyLgsLkqEFs 22 
                      LK++Ll+KYsgyLgsL++E+s
  OPUNC03G29870.1 208 LKRHLLKKYSGYLGSLRKELS 228
                      9******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012562.3E-23106157IPR005541KNOX2
PfamPF037911.7E-19111155IPR005541KNOX2
SMARTSM011882100115135IPR005539ELK domain
SMARTSM011885.2E-6207228IPR005539ELK domain
PROSITE profilePS5121310.353207227IPR005539ELK domain
PfamPF037896.9E-8208228IPR005539ELK domain
PROSITE profilePS5007113.054227290IPR001356Homeobox domain
SuperFamilySSF466898.58E-19228300IPR009057Homeodomain-like
SMARTSM003891.1E-12229294IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.4E-27232292IPR009057Homeodomain-like
CDDcd000863.68E-12239291No hitNo description
PfamPF059204.3E-16247286IPR008422Homeobox KN domain
PROSITE patternPS000270265288IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MEELEGHRCA GLPPPLLPFS KVSVQVYTVP SSSTAAAAAS AGGARQVSSG STVAPATRDG  60
GGGDRGRAAG VLDPVKARIV GYPAEAAEEI AAAARVREAR QRAAASHMPP APDPELDQFM  120
EDYCKLLVEC KEELSRPLQE AEEFLRTVES ELNSINSGPP LAALISESKA GLGSSDDDEH  180
EDGSGMEMME AAEDEDLGID PRSDDKALKR HLLKKYSGYL GSLRKELSKK RKKGKLPKEA  240
RQKLLTWWEL HYRWPYPSEM EKIALAESTG LEQKQINNWF INQRKRHWKP SEEMQFAVME  300
AYHHHHHQQQ NADAAAAFYV DARLVGAAAP AAAVYTTRPD HGVWRA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1222231LRKELSKKRK
2228232KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10488233}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0716640.0AB071664.1 Oryza sativa Indica Group mRNA for transcription factor OSH3, complete cds, cultivar:IR24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628822.11e-132homeobox protein knotted-1-like 7
SwissprotQ948L51e-133KNOS7_ORYSJ; Homeobox protein knotted-1-like 7
TrEMBLA0A0E0KII20.0A0A0E0KII2_ORYPU; Uncharacterized protein
STRINGOPUNC03G29870.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150631819
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.13e-60KNOTTED-like from Arabidopsis thaliana
Publications ? help Back to Top
  1. Sato Y,Aoki Y,Matsuoka M
    A loss-of-function mutation in the rice KNOX type homeobox gene, OSH3.
    Plant Cell Physiol., 2002. 43(1): p. 44-51
    [PMID:11828021]
  2. Sato Y,Fukuda Y,Hirano HY
    Mutations that cause amino acid substitutions at the invariant positions in homeodomain of OSH3 KNOX protein suggest artificial selection during rice domestication.
    Genes Genet. Syst., 2001. 76(6): p. 381-92
    [PMID:11922107]