PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC03G29750.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 358aa MW: 38313.1 Da PI: 5.9981 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.9 | 1.6e-12 | 180 | 227 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h +Er+RR+++ ++f L +++P + kK++Ka++L A++Y+k+Lq OPUNC03G29750.3 180 QEHILAERKRREKLSQRFIALSKIVPGL-----KKMDKASVLGDAIKYVKQLQ 227 67999***********************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.025 | 177 | 226 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 8.51E-18 | 180 | 245 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.6E-17 | 180 | 238 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.3E-10 | 180 | 227 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.31E-14 | 182 | 231 | No hit | No description |
SMART | SM00353 | 6.1E-15 | 183 | 232 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 358 aa Download sequence Send to blast |
MATQWFSNMV MDEPSFFHQW QSDGLLEQYT EQQIAVAFGQ AGEVDAAAAM VQHQQQQYAA 60 AAGEHRPRKA AKVNTSWDSC ITEQGSPADS SSPTILSFGG HADASAAAAV FASAAQGQSA 120 PYYGGASAAA LKPKQEVDAA AAPFSQARQV KRTYDAMVAP DVAKVPTAAA AASRPASQNQ 180 EHILAERKRR EKLSQRFIAL SKIVPGLKKM DKASVLGDAI KYVKQLQDQV KGLEEEARRR 240 PVEAAVLVKK SQLSADDDDG SSCDENFDGG EAAGLPEIEA RVSERTVLVK IHCENRKGAL 300 ITALSEVETI GLTIMNTNVL PFTSSSLDIT IMATAGENFS LSVKDIVKKL NQAFKLSL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 2e-13 | 182 | 236 | 9 | 63 | Transcription factor MYC2 |
5gnj_B | 2e-13 | 182 | 236 | 9 | 63 | Transcription factor MYC2 |
5gnj_E | 2e-13 | 182 | 236 | 9 | 63 | Transcription factor MYC2 |
5gnj_F | 2e-13 | 182 | 236 | 9 | 63 | Transcription factor MYC2 |
5gnj_G | 2e-13 | 182 | 236 | 9 | 63 | Transcription factor MYC2 |
5gnj_I | 2e-13 | 182 | 236 | 9 | 63 | Transcription factor MYC2 |
5gnj_M | 2e-13 | 182 | 236 | 9 | 63 | Transcription factor MYC2 |
5gnj_N | 2e-13 | 182 | 236 | 9 | 63 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 185 | 190 | ERKRRE |
2 | 186 | 191 | RKRREK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK120539 | 0.0 | AK120539.1 Oryza sativa Japonica Group cDNA clone:J013129F07, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015627848.1 | 0.0 | transcription factor bHLH18 | ||||
Refseq | XP_015627849.1 | 0.0 | transcription factor bHLH18 | ||||
TrEMBL | A0A0E0KIG4 | 0.0 | A0A0E0KIG4_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC03G29750.3 | 0.0 | (Oryza punctata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22750.2 | 1e-46 | bHLH family protein |