PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC03G28490.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | TCP | ||||||||
Protein Properties | Length: 372aa MW: 39786 Da PI: 7.1206 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 156.5 | 1.5e-48 | 100 | 258 | 1 | 136 |
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg..... 88 aa++kdrhski+T++g+RdRR+Rls+++a++fF+Lqd+LGfdk+skt++WLl+++k+ai e++++ +++s c e++sss s++ + ++ OPUNC03G28490.1 100 AAARKDRHSKISTAGGMRDRRMRLSLDVARKFFALQDMLGFDKASKTVQWLLNMSKAAIREIMSD--DASSVCeEDGSSSLSVDGKPHSspaeg 191 589**************************************************************..666678877777777773333345667 PP TCP 89 ...................kaaksaakskksqksaasalnlakesrakarararertrekmriknkl 136 k +++aa++k++++ a+++ ++kesrakar+rarert+ek+r+++++ OPUNC03G28490.1 192 gaagdhkgahshsdgkkpaKPRRAAATPKPPRRLANAHPVPDKESRAKARERARERTKEKNRMRWVT 258 7777777788888899997777777799************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 7.8E-45 | 102 | 254 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 34.132 | 103 | 161 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 12.264 | 234 | 251 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:2000032 | Biological Process | regulation of secondary shoot formation | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 372 aa Download sequence Send to blast |
MDIPLYQQLQ LTPPSPKPDH HHSTFFYYHH PPSSPSFPSF PSPAAAMIAS PSPLMHPFMD 60 LELEPQQQQP PPEDGAGGNN EYGGQGVDAG AIGLDGAAAA AARKDRHSKI STAGGMRDRR 120 MRLSLDVARK FFALQDMLGF DKASKTVQWL LNMSKAAIRE IMSDDASSVC EEDGSSSLSV 180 DGKPHSSPAE GGAAGDHKGA HSHSDGKKPA KPRRAAATPK PPRRLANAHP VPDKESRAKA 240 RERARERTKE KNRMRWVTLA SAISVEAATA AAAAAAAVED RSPTSPSNNL NHSSSTNLVS 300 TELEDGSSST RHNGGDGRMQ EISVASEASD VIMAFANGGA YGDSGSYYLQ QQHQQDQWEL 360 GGVVFANSRH YC |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that functions as a negative regulator of lateral branching, presumably through its expression in axillary buds (PubMed:12581309, PubMed:20547591). Involved in the fine tuning of shoot branching. May function as an integrator of multiple signaling pathways to regulate the development of axillary buds. Works partially downstream of strigolactones to inhibit bud outgrowth (PubMed:20547591). Binds to MADS57 to suppress the negative regulation of D14 by MADS57 and balance the expression of D14 for tillering (PubMed:23463009). {ECO:0000269|PubMed:12581309, ECO:0000269|PubMed:20547591, ECO:0000269|PubMed:23463009}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB491558 | 0.0 | AB491558.1 Oryza punctata tb1 gene for teosinte branched 1, complete cds, strain: W1514. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015630237.1 | 0.0 | transcription factor TB1-like | ||||
Swissprot | Q8LN68 | 0.0 | TB1_ORYSJ; Transcription factor TB1 | ||||
TrEMBL | A0A0E0KI06 | 0.0 | A0A0E0KI06_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC03G28490.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7253 | 36 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68800.1 | 8e-23 | TCP domain protein 12 |