PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC03G27900.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NF-YA | ||||||||
Protein Properties | Length: 278aa MW: 30060.6 Da PI: 8.9346 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 104.9 | 7.1e-33 | 182 | 238 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq+Rak+e ekk+ k+rkpylheSRh+hA+rR+Rg+gGrF OPUNC03G27900.4 182 EEPVYVNAKQYHGILRRRQSRAKAELEKKV-VKARKPYLHESRHQHAMRRARGTGGRF 238 69****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 5.7E-37 | 180 | 241 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 38.032 | 181 | 241 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 1.4E-28 | 183 | 238 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 8.0E-25 | 184 | 206 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 186 | 206 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 8.0E-25 | 215 | 238 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010262 | Biological Process | somatic embryogenesis | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0055046 | Biological Process | microgametogenesis | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 278 aa Download sequence Send to blast |
MGGLPYPTEF RGAGWIGCAS MESRPGGANL VEPRGQGALP SGIPIQQPWW TTSAGVGAVS 60 PAVVAPGSGA GISLSCRDGG GDDAAEESSD DSRRSGETKD GSTGQEKHHA TSQMTALASD 120 YLTPFSQLEL NQPIASAAYQ YPDSYYMGMV GPYGPQAMSA QTHFQLPGLT HSRMPLPLEI 180 SEEPVYVNAK QYHGILRRRQ SRAKAELEKK VVKARKPYLH ESRHQHAMRR ARGTGGRFLN 240 TKKNEDGALS EKAEPNKGEQ NSGYRRIPPD LQLLQKET |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 3e-21 | 182 | 245 | 2 | 65 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK069854 | 0.0 | AK069854.1 Oryza sativa Japonica Group cDNA clone:J023036P10, full insert sequence. | |||
GenBank | EU847012 | 0.0 | EU847012.1 Oryza sativa Japonica Group clone KCS256D08 CCAAT-binding transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015632634.1 | 0.0 | nuclear transcription factor Y subunit A-4 isoform X1 | ||||
Refseq | XP_015632635.1 | 0.0 | nuclear transcription factor Y subunit A-4 isoform X1 | ||||
Refseq | XP_015632636.1 | 0.0 | nuclear transcription factor Y subunit A-4 isoform X1 | ||||
Refseq | XP_015632637.1 | 0.0 | nuclear transcription factor Y subunit A-4 isoform X1 | ||||
TrEMBL | A0A0E0KHS9 | 0.0 | A0A0E0KHS9_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC03G27900.3 | 0.0 | (Oryza punctata) | ||||
STRING | OBART03G30600.3 | 0.0 | (Oryza barthii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30500.2 | 2e-31 | nuclear factor Y, subunit A7 |