PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G27900.3
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YA
Protein Properties Length: 362aa    MW: 39330.2 Da    PI: 10.0371
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G27900.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA104.31.1e-32266322158
        CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                      +ep+YVNaKQy++Il+RRq+Rak+e ekk+  k+rkpylheSRh+hA+rR+Rg+gGrF
  OPUNC03G27900.3 266 EEPVYVNAKQYHGILRRRQSRAKAELEKKV-VKARKPYLHESRHQHAMRRARGTGGRF 322
                      69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005215.7E-37264325IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115238.032265325IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.2E-28267322IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.0E-24268290IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860270290IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.0E-24299322IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010262Biological Processsomatic embryogenesis
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0055046Biological Processmicrogametogenesis
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MATLIFHCQR ESYPYAASID PPVRAAELNH RNNYGPLSSP NPISLRIRAR LSLARARASS  60
SSCCSSKSLN PRGGVHRLRL AGLSLCEGER ERSSPIGRRL RPACSVSRPG GANLVEPRGQ  120
GALPSGIPIQ QPWWTTSAGV GAVSPAVVAP GSGAGISLSC RDGGGDDAAE ESSDDSRRSG  180
ETKDGSTGQE KHHATSQMTA LASDYLTPFS QLELNQPIAS AAYQYPDSYY MGMVGPYGPQ  240
AMSAQTHFQL PGLTHSRMPL PLEISEEPVY VNAKQYHGIL RRRQSRAKAE LEKKVVKARK  300
PYLHESRHQH AMRRARGTGG RFLNTKKNED GALSEKAEPN KGEQNSGYRR IPPDLQLLQK  360
ET
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A9e-21266329265NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2880300.0AB288030.1 Oryza sativa Japonica Group OsHAP2D mRNA for HAP2 subunit of HAP complex, complete cds.
GenBankAK0698540.0AK069854.1 Oryza sativa Japonica Group cDNA clone:J023036P10, full insert sequence.
GenBankEU8470120.0EU847012.1 Oryza sativa Japonica Group clone KCS256D08 CCAAT-binding transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632634.10.0nuclear transcription factor Y subunit A-4 isoform X1
RefseqXP_015632635.10.0nuclear transcription factor Y subunit A-4 isoform X1
RefseqXP_015632636.10.0nuclear transcription factor Y subunit A-4 isoform X1
RefseqXP_015632637.10.0nuclear transcription factor Y subunit A-4 isoform X1
TrEMBLA0A0E0KHS80.0A0A0E0KHS8_ORYPU; Uncharacterized protein
STRINGOPUNC03G27900.30.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82053649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.22e-30nuclear factor Y, subunit A7