PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OPUNC03G27170.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 299aa MW: 31864.3 Da PI: 4.5542 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 52.3 | 7.6e-17 | 200 | 236 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C+nCgt++ Tp +Rrgp g++tLCnaCGl+++ kg+ OPUNC03G27170.1 200 CQNCGTSEkmTPAMRRGPAGPRTLCNACGLMWANKGT 236 **********************************997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00979 | 6.8E-10 | 59 | 94 | IPR010399 | Tify domain |
PROSITE profile | PS51320 | 14.698 | 59 | 94 | IPR010399 | Tify domain |
Pfam | PF06200 | 2.1E-12 | 62 | 93 | IPR010399 | Tify domain |
PROSITE profile | PS51017 | 13.235 | 128 | 170 | IPR010402 | CCT domain |
Pfam | PF06203 | 1.9E-14 | 128 | 168 | IPR010402 | CCT domain |
PROSITE profile | PS50114 | 8.8 | 194 | 253 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 3.8E-10 | 194 | 247 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 6.18E-11 | 197 | 244 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 6.7E-14 | 199 | 238 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.44E-16 | 199 | 254 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 200 | 227 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 2.0E-14 | 200 | 236 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 299 aa Download sequence Send to blast |
MPDAAAADAV MRDAPATAAG GGGGDDDDDG DDDTKEEDDD DEGEEEEPAA APEPVSALLP 60 GSPNQLTLLF QGEVYVFESV TPEKVQAVLL LLGSSELSPG LANMVLPNQH ENRGYDDLLQ 120 RTDIPAKRVA SLIRFREKRK ERNFDKKIRY AIRKEVALRM QRRKGQFAGR ANMEGESLSP 180 GCEPASQGSG QDFPSRESKC QNCGTSEKMT PAMRRGPAGP RTLCNACGLM WANKGTLRSC 240 PKAKVESSVV ATEQSGIDNK ALVVPNPDNI TTASHGEAMG GDNSPANEAE IGAPKAHSQ |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By drought and salt stresses. {ECO:0000269|PubMed:19618278}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK105025 | 0.0 | AK105025.2 Oryza sativa Japonica Group cDNA clone:001-011-G08, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015628049.1 | 1e-165 | GATA transcription factor 18 | ||||
Swissprot | Q10F25 | 1e-166 | GAT18_ORYSJ; GATA transcription factor 18 | ||||
TrEMBL | A0A0E0KHI3 | 0.0 | A0A0E0KHI3_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC03G27170.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3460 | 37 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G21175.2 | 5e-59 | ZIM-like 1 |
Publications ? help Back to Top | |||
---|---|---|---|
|