PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G24840.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 875aa    MW: 95194.3 Da    PI: 6.7263
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G24840.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.64.4e-183895457
                     -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                       ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  OPUNC03G24840.1 38 YVRYTPEQVEALERVYGECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 95
                     6789****************************************************97 PP
2START171.74.7e-541863892200
                      HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEE CS
            START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galql 93 
                      +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++ +++l vi +g  g+++l
  OPUNC03G24840.1 186 IAEETLAEFLSKATGTAVDWVQMVGMKPGPDSIGIIAVSHNCSGVAARACGLVSLEPT-KVAEILKDRPSWYRDCRCVDVLHVIPTGngGTIEL 278
                      68999*****************************************************.8888888888************************* PP

                      EEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHH CS
            START  94 mvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrs 183
                      ++++++a+++l++ Rdf+++Ry+  l++g++vi+++S+++ +  p+   ++++vRae+lpSg+li+p+++g+s +++v+hvdl++++++++lr+
  OPUNC03G24840.1 279 IYMQTYAPTTLAApRDFWILRYTSGLEDGSLVICERSLTQSTGGPSgpnTPNFVRAEVLPSGYLIRPCEGGGSMIHIVDHVDLDAWSVPEVLRP 372
                      ***********999****************************9999999********************************************* PP

                      HHHHHHHHHHHHHHHHT CS
            START 184 lvksglaegaktwvatl 200
                      l++s  + ++k++ a++
  OPUNC03G24840.1 373 LYESPKILAQKMTIARC 389
                      ***********999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.2563296IPR001356Homeobox domain
SMARTSM003892.7E-1534100IPR001356Homeobox domain
SuperFamilySSF466891.5E-163699IPR009057Homeodomain-like
CDDcd000865.50E-163797No hitNo description
PfamPF000461.1E-153895IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.9E-183995IPR009057Homeodomain-like
CDDcd146861.87E-689128No hitNo description
PROSITE profilePS5084827.274176376IPR002913START domain
CDDcd088751.98E-66180407No hitNo description
Gene3DG3DSA:3.30.530.205.3E-24184368IPR023393START-like domain
SMARTSM002344.8E-43185394IPR002913START domain
PfamPF018529.2E-52186389IPR002913START domain
SuperFamilySSF559611.1E-37186374No hitNo description
PfamPF086702.7E-51732874IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 875 aa     Download sequence    Send to blast
MAAAMVAAVH GVGGGRHQQQ DRSSPGGGGA PQVDTGKYVR YTPEQVEALE RVYGECPKPS  60
SLRRQQLIRE CPILSNIEPK QIKVWFQNRR CREKQRKEAS RLQTVNRKLT AMNKLLMEEN  120
DRLQKQVSRL VYENGYMRQQ LHNPSVATTD TSCESVVTSG QHHQQQNPAA TRPQRDANNP  180
AGLLAIAEET LAEFLSKATG TAVDWVQMVG MKPGPDSIGI IAVSHNCSGV AARACGLVSL  240
EPTKVAEILK DRPSWYRDCR CVDVLHVIPT GNGGTIELIY MQTYAPTTLA APRDFWILRY  300
TSGLEDGSLV ICERSLTQST GGPSGPNTPN FVRAEVLPSG YLIRPCEGGG SMIHIVDHVD  360
LDAWSVPEVL RPLYESPKIL AQKMTIARCL TIAGLLLQAL RHIRQIAHES SGEMPYGGGR  420
QPAVLRTFSQ RLSRGFNDAV NGFPDDGWSL MSSDGAEDVT IAFNSSPNKL VGSHVNSSQL  480
FSAIGGGILC AKASMLLQNV PPALLVRFLR EHRSEWADPG VDAYSAAALR ASPYAVPGLR  540
AGGFMGSQVI LPLAHTLEHE EFLEVIRLEG HSLCHDEVVL SRDMYLLQLC SGVDENAAGA  600
CAQLVFAPID ESFADDAPLL PSGFRVIPLD AKTDAPSATR TLDLASTLEV GSGGTTRASS  660
DTSSTCNTRS VLTIAFQFSY ENHLRESVAA MARQYVRTVV ASVQRVAMAI APSRLGGQIE  720
TKNPPGSPEA HTLARWIGRS YRFHTGADLL RTDSQSTDSS LKAMWQHSDS IMCCSLKAAP  780
VFTFANQAGL DMLETTLIAL QDISLEKILD DDGRKVLCTE FPKIMQQGFA YLPGGVCVSS  840
MGRPVSYEQA VAWKVLSDDD TPHCLAFMFV NWSFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1032840.0AK103284.1 Oryza sativa Japonica Group cDNA clone:J033124M18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632484.10.0homeobox-leucine zipper protein HOX32
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLA0A0E0KGP80.0A0A0E0KGP8_ORYPU; Uncharacterized protein
STRINGOPUNC03G24840.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]