PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC03G24750.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | LSD | ||||||||
Protein Properties | Length: 205aa MW: 21967.3 Da PI: 10.8084 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 42.2 | 1.4e-13 | 77 | 101 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr +L+YP GApsV+CalC+++ OPUNC03G24750.1 77 CHGCRSVLRYPSGAPSVCCALCQAI 101 ***********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 1.5E-12 | 74 | 104 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 6.9E-10 | 77 | 101 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MKTTKQQKSP PPPPPSRFLI LLLVAGERRR PVAGARSSRS SASLPGSHHH RCRRGVGDLV 60 LPAAAAAAPG MQSQIVCHGC RSVLRYPSGA PSVCCALCQA ITTVPPPAPG TGLAQWFHAF 120 ISVELGGRRL LCFDGRRTHS FDFIHHDLNY LGRNGNGSSN MWWLPNIADP PSRPQNVTVV 180 VENPMTVDEK GKLVSNVVVG VTTGK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK111569 | 4e-75 | AK111569.1 Oryza sativa Japonica Group cDNA clone:J013071E13, full insert sequence. | |||
GenBank | CT830679 | 4e-75 | CT830679.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA116O15, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006650331.1 | 2e-36 | PREDICTED: protein LOL3 | ||||
Refseq | XP_015690721.1 | 2e-36 | PREDICTED: protein LOL3 | ||||
Swissprot | Q6ASS2 | 5e-37 | LOL3_ORYSJ; Protein LOL3 | ||||
TrEMBL | A0A0E0KGN5 | 1e-148 | A0A0E0KGN5_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC03G24750.1 | 1e-149 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP22220 | 4 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20380.7 | 5e-15 | LSD family protein |
Publications ? help Back to Top | |||
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