PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G23890.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 337aa    MW: 35643.3 Da    PI: 6.6409
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G23890.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM354.3e-11375367
              NAM  3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.........kvkaeekewyfFskrdkk 67
                      G+ F+P d+el++++L++k++++++++  +i+++d+y++ P +L +         + ++    +yfF++  +k
  OPUNC03G23890.1  3 GGLTFSPPDHELITKFLRPKIADDTIKV-PFIHDADVYSAPPPELAArhvpargtdRGAGAGAVYYFFCPGGQK 75
                     699*************************.88**************84456665443222233466999987666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100516.1041134IPR003441NAC domain
SuperFamilySSF1019416.8E-213134IPR003441NAC domain
PfamPF023654.6E-64114IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MAGGLTFSPP DHELITKFLR PKIADDTIKV PFIHDADVYS APPPELAARH VPARGTDRGA  60
GAGAVYYFFC PGGQKAVLDA GGSRVGHLRR LSYGERDKGS GRRLTRLGWC MTEFGVDHVG  120
GAMASLVLCK MYRSPRAAQV VARQAASASS SCSKRKAADD LVHAPASSRH PHADVMPAGV  180
DGDEVSSIHP SGQFHVKEDE QSVVPAPEEQ ALVQTMDGPR SDHDVIMALA MGATVDDLLG  240
PKHGEPGEPS PCSVSGGGVE PCTGPASLGL GGDMAMAFPA PPAGEFSWDK ELAWIRELLS  300
GSPPRVPPCD QNQQLLYGCL NNYEPTRVTA VGSRKKY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1072061e-110AC107206.4 Oryza sativa chromosome 3 BAC OSJNBa0063J18 genomic sequence, complete sequence.
GenBankAP0149591e-110AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629679.14e-34NAC transcription factor NAM-2
TrEMBLA0A0E0KGC00.0A0A0E0KGC0_ORYPU; Uncharacterized protein
STRINGOPUNC03G23890.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43632158