PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G21490.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 406aa    MW: 43909.9 Da    PI: 8.6393
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G21490.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.11.6e-32130186259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      dDgynWrKYGqK vkg e+prsYY+Ct+ +Cpvkkkvers+ d+++++i+Y+g+Hnh+
  OPUNC03G21490.1 130 DDGYNWRKYGQKAVKGGEYPRSYYKCTHLSCPVKKKVERSS-DGQITQIIYRGQHNHQ 186
                      8****************************************.***************8 PP
2WRKY104.55.8e-33295353159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC vkk++ers++dpk+v++tYeg+H h+
  OPUNC03G21490.1 295 LDDGYRWRKYGQKVVKGNPHPRSYYKCTYQGCDVKKHIERSSQDPKAVITTYEGKHSHD 353
                      59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.6E-29120188IPR003657WRKY domain
SuperFamilySSF1182903.4E-26124188IPR003657WRKY domain
PROSITE profilePS5081124.593124188IPR003657WRKY domain
SMARTSM007741.0E-34129187IPR003657WRKY domain
PfamPF031061.0E-24130186IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.5E-36282355IPR003657WRKY domain
SuperFamilySSF1182901.96E-29287355IPR003657WRKY domain
PROSITE profilePS5081137.172290355IPR003657WRKY domain
SMARTSM007741.0E-38295354IPR003657WRKY domain
PfamPF031061.3E-25296353IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MGSPAASAPA PPSPFPVPHG LSPTAFLGGS PGLFSPTGNF EMSHQQALAQ VTAQAVHSPY  60
SMINQSDYSL PFSSTTTSVL ASQHVNSSAN VSSPREIPTL PSHTGNSNIE STEVSHGYQT  120
TALTEDKPAD DGYNWRKYGQ KAVKGGEYPR SYYKCTHLSC PVKKKVERSS DGQITQIIYR  180
GQHNHQRPPK RRSKEGGALL NEADVSPEKE DASTRSEHGS QDYSGKFKAS NDGGPSSSRR  240
GDGGEQISGS SDSDDQGEEE VKVEGGATSD GNANKRHVLP AQRIIVQTAS EVDLLDDGYR  300
WRKYGQKVVK GNPHPRSYYK CTYQGCDVKK HIERSSQDPK AVITTYEGKH SHDVPAARNS  360
SHSSASTNVS SSNNLPHRDR GQRLSRRDGL RNASSVSCLQ LKEESG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-37115356578Probable WRKY transcription factor 4
2lex_A1e-37115356578Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1186191RPPKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1938020.0AF193802.2 Oryza sativa zinc finger transcription factor WRKY1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633314.10.0probable WRKY transcription factor 4 isoform X1
SwissprotQ9ZQ701e-100WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A0E0KFJ30.0A0A0E0KFJ3_ORYPU; Uncharacterized protein
STRINGOPUNC03G21490.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134538122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.13e-83WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]