PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G19880.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 518aa    MW: 53797.5 Da    PI: 6.5107
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G19880.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS193.61.3e-591385152374
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn.....sseelaalkl....fs 85 
                      ++lL  cA av++g+l+++q+l   l el s +gd+++Rlaa+ ++ALa+rl    ++  ++a+++ + +  +        e   +++    f+
  OPUNC03G19880.1 138 EQLLNPCAVAVEAGNLSRVQHLFYVLGELESFSGDANHRLAAHGLRALARRLPAaVGPAAAAAVRVPPCECPTpafaaA--EPRLFRAslirFH 229
                      689*************************************************996677777777555544444334332..22222225589** PP

             GRAS  86 evsPilkfshltaNqaIleavege.......ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesg.....skeeleetgerL 165
                      evsP++ + + +aN aI +a           + +H++D+++s+G+QWp+Ll++L+ +p  + pps+R+T+ g+ +++      +         L
  OPUNC03G19880.1 230 EVSPWFALPNALANAAIAQASTCGaaaaatpRPLHVVDLGVSHGVQWPTLLESLTRQPggRAPPSVRLTVAGPGDTTpapfsASPPGYDFSPHL 323
                      ******************9865333444455778************************656699*******99887788998888899999*** PP

             GRAS 166 akfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfle 259
                       ++A+++++++++    a +l+d          gEal+V+l+++l +         +er+++L+ v++l+P++vv++e ++  +++s + +f+ 
  OPUNC03G19880.1 324 LRYAKSINLDLRIGC--AATLDDAVQGYCTAGDGEALVVCLQFRLGHAA------VDERRDILRKVRGLNPELVVLSELDSCVGEGSAAGEFAA 409
                      *************98..6889988777778888**********999997......445889********************************* PP

             GRAS 260 aleyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve. 352
                       le  + +++s++a +    + + + Er+ll+ e+  ++a+  a      e  e Wrer+ +aGF+ ++++ +a+++ak+llrk++  g+++  
  OPUNC03G19880.1 410 RLELLWRFLESTSAAF----KGKDVDERRLLETEAGAILATDVAG-----EGREGWRERMAAAGFEDASFGAEAVESAKSLLRKYD-SGWEMSl 493
                      ************9997....6666677888888888888888887.....77889*******************************.7777774 PP

             GRAS 353 eesgslvlgWkdrpLvsvSaWr 374
                         g++ l Wk++p+ ++S Wr
  OPUNC03G19880.1 494 AATGAVALRWKGQPVSFCSLWR 515
                      5577777**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098534.56111495IPR005202Transcription factor GRAS
PfamPF035144.5E-57138515IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042446Biological Processhormone biosynthetic process
GO:2000032Biological Processregulation of secondary shoot formation
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MNYHEQEHHR LAAAASSNGL DWFEESMSSF LAADVDLAAA GGGGAGGYAW WAASPAAQQD  60
DIGSVVAQTL SPPSAPLAAA SPSIASPAAS SPSDVPSSSS KKRKSPAHRA SGNSGGKKGG  120
GGKGGGAAGS DRDMRWAEQL LNPCAVAVEA GNLSRVQHLF YVLGELESFS GDANHRLAAH  180
GLRALARRLP AAVGPAAAAA VRVPPCECPT PAFAAAEPRL FRASLIRFHE VSPWFALPNA  240
LANAAIAQAS TCGAAAAATP RPLHVVDLGV SHGVQWPTLL ESLTRQPGGR APPSVRLTVA  300
GPGDTTPAPF SASPPGYDFS PHLLRYAKSI NLDLRIGCAA TLDDAVQGYC TAGDGEALVV  360
CLQFRLGHAA VDERRDILRK VRGLNPELVV LSELDSCVGE GSAAGEFAAR LELLWRFLES  420
TSAAFKGKDV DERRLLETEA GAILATDVAG EGREGWRERM AAAGFEDASF GAEAVESAKS  480
LLRKYDSGWE MSLAATGAVA LRWKGQPVSF CSLWRPAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B6e-2413551731421Protein SHORT-ROOT
5b3h_E6e-2413551731421Protein SHORT-ROOT
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1114121GGKKGGGG
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking. May be a target of DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK) (PubMed:15961669). Is essential for Nod factor-elicited expression of ERN1 (PubMed:23077241). {ECO:0000269|PubMed:15961669, ECO:0000269|PubMed:23077241}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced after treatment with Sinorhizobium meliloti. {ECO:0000269|PubMed:15961669}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021318969.10.0nodulation-signaling pathway 1 protein
SwissprotQ4VYC81e-117NSP1_MEDTR; Nodulation-signaling pathway 1 protein
TrEMBLA0A0E0KEX80.0A0A0E0KEX8_ORYPU; Uncharacterized protein
STRINGOPUNC03G19880.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61352854
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.16e-84GRAS family protein
Publications ? help Back to Top
  1. Cerri MR, et al.
    Medicago truncatula ERN transcription factors: regulatory interplay with NSP1/NSP2 GRAS factors and expression dynamics throughout rhizobial infection.
    Plant Physiol., 2012. 160(4): p. 2155-72
    [PMID:23077241]
  2. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]