PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G18230.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 290aa    MW: 31055.2 Da    PI: 8.5759
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G18230.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.37.2e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd  lv +v+++G+g+W++++++ g+ R+ k+c++rw +yl
  OPUNC03G18230.1 14 KGPWTPEEDIVLVSYVQEHGPGNWRAVPAKTGLLRCSKSCRLRWTNYL 61
                     79******************************99************97 PP
2Myb_DNA-binding43.66.8e-1467112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg ++  E+ l++++ ++lG++ W++Ia++++  Rt++++k++w+++l
  OPUNC03G18230.1  67 RGGFSDHEERLILHLQALLGNR-WAAIASYLP-DRTDNDIKNFWNTHL 112
                      7889******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.1E-23564IPR009057Homeodomain-like
PROSITE profilePS5129424.974965IPR017930Myb domain
SuperFamilySSF466891.46E-2911108IPR009057Homeodomain-like
SMARTSM007174.7E-141363IPR001005SANT/Myb domain
PfamPF002492.0E-161461IPR001005SANT/Myb domain
CDDcd001671.11E-111661No hitNo description
Gene3DG3DSA:1.10.10.602.1E-2265116IPR009057Homeodomain-like
SMARTSM007172.0E-1466114IPR001005SANT/Myb domain
PROSITE profilePS5129418.06166116IPR017930Myb domain
PfamPF002491.2E-1267112IPR001005SANT/Myb domain
CDDcd001672.00E-1170112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MGRPPCCDKE GVKKGPWTPE EDIVLVSYVQ EHGPGNWRAV PAKTGLLRCS KSCRLRWTNY  60
LRPGIRRGGF SDHEERLILH LQALLGNRWA AIASYLPDRT DNDIKNFWNT HLKKKLRPSS  120
ASFSPPPPTM STPLVARGQW ERKLQTDIDL ARRALRDALS VDAASNHPPD QPTPAIISSS  180
SSGPSAAPYA LSERNISMML SGWAPPGRGS AVAAGATESA STAGTSSEIT DCCSASSASN  240
CNNNPVLLPS TTTASMLACD SDAMATAAGV APLSAIESWL LLVALRNYAF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-26141164105MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-26141164105C-Myb DNA-Binding Domain
1msf_C2e-26141164105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0847620.0AC084762.8 Oryza sativa chromosome 3 BAC OSJNBa0013O08 genomic sequence, complete sequence.
GenBankAF4741360.0AF474136.1 Oryza sativa typical P-type R2R3 Myb protein gene, partial cds.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630096.11e-129myb-related protein 306
SwissprotP813925e-95MYB06_ANTMA; Myb-related protein 306
TrEMBLA0A0E0KEB80.0A0A0E0KEB8_ORYPU; Uncharacterized protein
STRINGOPUNC03G18230.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22938296
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47600.12e-87myb domain protein 94
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]