PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC03G15960.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bZIP | ||||||||
Protein Properties | Length: 332aa MW: 35954.1 Da PI: 6.9823 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 30.7 | 6.9e-10 | 137 | 184 | 5 | 52 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 kr++r NR +A rs +RK +i eLe+kv++L++e ++L +l OPUNC03G15960.1 137 KRAKRILANRQSAARSKERKARYITELERKVQTLQTEATTLSAQLTLF 184 9****************************************9888765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.5E-14 | 133 | 197 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.599 | 135 | 198 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 1.8E-8 | 137 | 191 | No hit | No description |
Pfam | PF00170 | 1.3E-8 | 137 | 183 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 8.44E-11 | 137 | 188 | No hit | No description |
CDD | cd14703 | 3.79E-22 | 138 | 187 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 332 aa Download sequence Send to blast |
MQEPKHADPA AMRGAHHRRA RSEVAFRLPD DLDLGGGGGG GAGAFDEIGS EDDLFSTFMD 60 IEKISSGPAA AGGSDRDRAA ETSSPPRPKH RHSSSVDGSG FFAAARKDAA ASLAEVMEAK 120 KAMTPEQLSE LAAIDPKRAK RILANRQSAA RSKERKARYI TELERKVQTL QTEATTLSAQ 180 LTLFQRDTTG LSAENAELKI RLQAMEQQAQ LRDALNDALK QELERLKLAT GEMTNSNETY 240 SMGLQHVPYN TPFFPLSQQN AARQNGGTQL PPQFQPPRPN VPNHMLSHPN GLQDIMQQDP 300 LGRLQGLDIS KGPLVVKSES SSISASESSS TF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269|PubMed:14704272}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00303 | DAP | Transfer from AT2G40620 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK059473 | 0.0 | AK059473.1 Oryza sativa Japonica Group cDNA clone:001-028-E05, full insert sequence. | |||
GenBank | AK070466 | 0.0 | AK070466.1 Oryza sativa Japonica Group cDNA clone:J023052D02, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015632816.1 | 0.0 | transcription factor RF2b | ||||
Swissprot | Q6S4P4 | 0.0 | RF2B_ORYSJ; Transcription factor RF2b | ||||
TrEMBL | A0A0E0KDF4 | 0.0 | A0A0E0KDF4_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC03G15960.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2683 | 36 | 83 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40620.1 | 2e-76 | bZIP family protein |
Publications ? help Back to Top | |||
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