PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC03G15320.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

WOX

Protein Properties

Length: 325aa MW: 32980.6 Da PI: 7.9482

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC03G15320.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	47.6	2.8e-15	38	98	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+++eq+ +Le+ F++ +p ++e ++ k l + +++V++WFqNrR + ++ OPUNC03G15320.1 38 RSRWTPKPEQILILESIFNSgMVNPPKDETVRIRKLLerfgAVGDANVFYWFQNRRSRSRR 98 89***************99***********************************997 PP
2	Wus_type_Homeobox	106.8	1.3e-34	37	100	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtP+peQi iLe++++sG+++P+k+e+ ri++ Le++G+++d+NVfyWFQNr++R+r++q OPUNC03G15320.1 37 VRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLERFGAVGDANVFYWFQNRRSRSRRRQ 100 589***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	11.256	34	99	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.98E-14	34	106	IPR009057	Homeodomain-like
SMART	SM00389	1.2E-6	36	103	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.2E-8	38	105	IPR009057	Homeodomain-like
Pfam	PF00046	5.3E-13	38	98	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MEGSSNSPDQ QSSGGSPEER GSGGSGGGGG RGAGEPVRSR WTPKPEQILI LESIFNSGMV 60 NPPKDETVRI RKLLERFGAV GDANVFYWFQ NRRSRSRRRQ RQMQAAAAAA AAAAAAASSS 120 SPSANTSPAA ASATVQVGLP SGAVVHTMAM GGSACQYEQQ ASSSSSSGST GGTSSLGLFA 180 HGAGASGGYL QASCGASASA SSALAPGLMG DVDSGGSDDL FAISRQMGFV GSPRCSPASP 240 ATPSSAATAA QQQFYSCQLP AATITVFING VPMEVPRGPI DLRAMFGQDV MLVHSTGALL 300 PVNDYGILMQ SLQIGESYFL VARQT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK063262	0.0	AK063262.1 Oryza sativa Japonica Group cDNA clone:001-113-A08, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025796618.1	1e-132	WUSCHEL-related homeobox 6-like
Swissprot	Q10M29	1e-131	WOX6_ORYSJ; WUSCHEL-related homeobox 6
TrEMBL	A0A0E0KD66	0.0	A0A0E0KD66_ORYPU; Uncharacterized protein
STRING	OPUNC03G15320.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1078	37	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17810.2	9e-29	WUSCHEL related homeobox 12

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]