PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G13410.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family BBR-BPC
Protein Properties Length: 405aa    MW: 45011 Da    PI: 9.7107
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G13410.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind387.61.9e-11813401300
        GAGA_bind   1 mdddgsrernkg.yyepaaslkenlglqlmssia.erdaki.........rernlalsekkaavaerd.......................... 57 
                      mddd+s++ ++g ++e+    ++nlglqlmss++ +rd+k+         +++++    +++ +++rd                          
  OPUNC03G13410.1   1 MDDDASMSMRWGgFFESP---ARNLGLQLMSSVPaDRDTKQllsgspflhHHQHV----PHHHHHPRDcggngngngvpnggampppateapps 87 
                      9*******55877***99...88**********99******88777665333333....555668888************************** PP

        GAGA_bind  58 ..maflqrdkalae...rnkalverdnkllalllvensla...salpvgvqvlsgtksidslqqlse..pqledsave.lreeeklealpieea 140
                        m+f+++d++++    +++++++r++k+l++l+v ++++   +++pvg+++++gt+s+++lq++++  pq ++++ + +++ee+++++ iee+
  OPUNC03G13410.1  88 mpMNFVRNDMWMHPqqqQHHHHHPREHKVLHNLTVGHGSShiaHHDPVGYGMIPGTHSTHTLQMMQQtePQPQPPPPPqQPKEECISSPLIEEN 181
                      ************983223345678*************9988999*****************99955545999988888799************* PP

        GAGA_bind 141 aeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaC 234
                      +++++e + +kkrq++++pk+++akk+kk s +++++ +++   +r++ ++k+i++v+ng++lD s++P+PvCsCtGa++qCY+WG+GGWqSaC
  OPUNC03G13410.1 182 VPVIDEPPPPKKRQQGRQPKVPRAKKPKK-SVAPREDGAPNAPTPRRRGPRKNIGMVINGIDLDLSRIPTPVCSCTGAPQQCYRWGAGGWQSAC 274
                      *****************************.66777777777766************************************************** PP

        GAGA_bind 235 CtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvti 300
                      CtttiS+yPLP+stkrrgaRiagrKmS+gafkk+LekLa+eGy+l+np+DLk++WAkHGtnkfvti
  OPUNC03G13410.1 275 CTTTISTYPLPMSTKRRGARIAGRKMSHGAFKKVLEKLAGEGYNLNNPIDLKTFWAKHGTNKFVTI 340
                      *****************************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012261.1E-1931341IPR010409GAGA-binding transcriptional activator
PfamPF062173.4E-1211340IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MDDDASMSMR WGGFFESPAR NLGLQLMSSV PADRDTKQLL SGSPFLHHHQ HVPHHHHHPR  60
DCGGNGNGNG VPNGGAMPPP ATEAPPSMPM NFVRNDMWMH PQQQQHHHHH PREHKVLHNL  120
TVGHGSSHIA HHDPVGYGMI PGTHSTHTLQ MMQQTEPQPQ PPPPPQQPKE ECISSPLIEE  180
NVPVIDEPPP PKKRQQGRQP KVPRAKKPKK SVAPREDGAP NAPTPRRRGP RKNIGMVING  240
IDLDLSRIPT PVCSCTGAPQ QCYRWGAGGW QSACCTTTIS TYPLPMSTKR RGARIAGRKM  300
SHGAFKKVLE KLAGEGYNLN NPIDLKTFWA KHGTNKFVTI SSRTVEAIDI HVPAYYCNGQ  360
CRCWNVMIQR QEEQSCTYFS FGNISAKEMN SKSRGNARAE KGDPW
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}.
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126180.0CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612725.11e-176barley B recombinant-like protein A isoform X1
RefseqXP_015612727.11e-176barley B recombinant-like protein A isoform X1
RefseqXP_015612730.11e-176barley B recombinant-like protein B isoform X1
RefseqXP_015612731.11e-176barley B recombinant-like protein B isoform X1
SwissprotP0DH881e-177BBRA_ORYSJ; Barley B recombinant-like protein A
SwissprotP0DH891e-177BBRB_ORYSJ; Barley B recombinant-like protein B
TrEMBLA0A0E0KCJ00.0A0A0E0KCJ0_ORYPU; Uncharacterized protein
STRINGOPUNC03G13410.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22113697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14685.32e-59basic pentacysteine 2
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]