PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G13180.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 418aa    MW: 45683.4 Da    PI: 10.4537
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G13180.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix28.83.2e-091990267
         trihelix  2 WtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikeg 67
                     W++ e+ aLi+a   +  + +rg+l  ++W+  ++++      + r f+r+ +qC+ ++  l+ ryk++ + 
  OPUNC03G13180.1 19 WSDGETTALIDAWGPLYVARNRGSLPTKDWRVAASAVnarraaAGRRFNRTRVQCQTRLHTLKERYKRELAK 90
                     ****************************************9999999********************98655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.4E-1618103No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MSSSKPSPPP PQQRADGWWS DGETTALIDA WGPLYVARNR GSLPTKDWRV AASAVNARRA  60
AAGRRFNRTR VQCQTRLHTL KERYKRELAK PPPSGWRHFS RLQVFLAGPE YPPPGFPPKM  120
LPASIKKEEE EECQVGSGGG GLLRCWAVPT RPRNGAAAWC PAAVVVTKLA EVYERVELAR  180
LEVEKEKVAM EREKACKNRL DYLKKRLKAE RSRSKGGPAP APPPPPSVDR LRALLRLAPS  240
VPPGFTPRGG AIPKVGEEEK AESCASPLPR SWPSVPKRPR TAVALLPLSS STGHQHGDGG  300
TPCTEVAAAL DRLAGTYERV EVAKQKEATR LEERRLEAMR DLEIERMRIL VDVAISASAS  360
AVADAATATA ASSSCVEKAI DGDAPAKSYI GLGYRERLAR YRRVHGEIFV LFSSRMAG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2131300.0AC213130.1 Oryza glaberrima clone OG_BBa0027N13, complete sequence.
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0KCG10.0A0A0E0KCG1_ORYPU; Uncharacterized protein
STRINGOPUNC03G13180.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140221313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05550.15e-11sequence-specific DNA binding transcription factors