PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC03G11920.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Dof

Protein Properties

Length: 393aa MW: 39956.2 Da PI: 9.4711

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC03G11920.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.4	3.7e-39	86	145	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +e alkcprCdstntkfCyynnyslsqPr+fCk+CrryWt+GG+lrnvPvGgg+r+nk+s OPUNC03G11920.1 86 PEPALKCPRCDSTNTKFCYYNNYSLSQPRHFCKTCRRYWTRGGSLRNVPVGGGCRRNKRS 145 67899*****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-36	70	144	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.3E-33	89	144	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.758	90	144	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	92	128	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 393 aa Download sequence Send to blast
MVFPSVPAYL DPPNWNNQQG QPPRPANVGG GDAQHLPVGP TAATAEAGEV GGLPSSSSAS 60 AAAAAAQQAR PNSMAERARL ARAPQPEPAL KCPRCDSTNT KFCYYNNYSL SQPRHFCKTC 120 RRYWTRGGSL RNVPVGGGCR RNKRSGKSSA AAGASSSSKP SSSVARQLPG GGASPMPSAA 180 ASTPGGAAGA IIPPSGLSSM SHHHFPFLGA MHSPGPNLGL TFSAGFQPLG GMHHHVDAVN 240 QFPVASGGGA TIGASLEQWR VQQQQPQQHQ FPFLGGALEL PPPPPMYQLG LDATREAGTG 300 ATAAAFTLGQ TSATATTSRQ EGSMKLEDSK GLEMSLQRQY MAAIRQGDGV WGNNGGNGGS 360 DGGGNGGGGS WTMNFPGFHS SSGGGGDDGG GVL

Sequence ? help Back to Top

Protein Sequence Length: 393 aa Download sequence Send to blast

MVFPSVPAYL DPPNWNNQQG QPPRPANVGG GDAQHLPVGP TAATAEAGEV GGLPSSSSAS  60
AAAAAAQQAR PNSMAERARL ARAPQPEPAL KCPRCDSTNT KFCYYNNYSL SQPRHFCKTC  120
RRYWTRGGSL RNVPVGGGCR RNKRSGKSSA AAGASSSSKP SSSVARQLPG GGASPMPSAA  180
ASTPGGAAGA IIPPSGLSSM SHHHFPFLGA MHSPGPNLGL TFSAGFQPLG GMHHHVDAVN  240
QFPVASGGGA TIGASLEQWR VQQQQPQQHQ FPFLGGALEL PPPPPMYQLG LDATREAGTG  300
ATAAAFTLGQ TSATATTSRQ EGSMKLEDSK GLEMSLQRQY MAAIRQGDGV WGNNGGNGGS  360
DGGGNGGGGS WTMNFPGFHS SSGGGGDDGG GVL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC083942	0.0	AC083942.8 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0002D01, from chromosome 3, complete sequence.
GenBank	AC137698	0.0	AC137698.1 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0014A21, from chromosome 3, complete sequence.
GenBank	AP014959	0.0	AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015629100.1	0.0	dof zinc finger protein DOF3.6 isoform X1
TrEMBL	A0A0E0KBY9	0.0	A0A0E0KBY9_ORYPU; Uncharacterized protein
STRING	OPUNC03G11920.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12301	24	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55370.3	4e-42	OBF-binding protein 3