PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC03G10640.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | FAR1 | ||||||||
Protein Properties | Length: 710aa MW: 79018.7 Da PI: 6.1724 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 85.8 | 6.5e-27 | 70 | 160 | 1 | 88 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fY++YA+++GF++r+s+ ++s+r+++i++r+ vCskeg++e+++ + +++++ r+ tr+gCka+l++kk +kw+vtk+ ++HnH OPUNC03G10640.2 70 DFYSKYARHAGFRIRISRYTRSRRDNSIISRRIVCSKEGFHETRDCEslhVDQKQQARVGTRVGCKAMLMIKKFGPDKWVVTKFIKNHNHG 160 6*******************************************99999899999***********************************5 PP | |||||||
2 | FAR1 | 86.6 | 3.7e-27 | 207 | 300 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY +YA+ GF+ r+s+ +s+r+++i++r+ vCskeg+re + +k ++++r+r+ tr+gCka+++vk++++gkw+v+k+e+eHnH+l OPUNC03G10640.2 207 FYINYARVNGFRARISRYCRSRRDNSIISRQIVCSKEGFREVRARKditdgGKTTKRPRMITRVGCKAMIVVKRMNSGKWMVSKFEKEHNHSLL 300 9******************************************9999999999999***********************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.0E-24 | 70 | 160 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF03101 | 1.1E-24 | 207 | 300 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 710 aa Download sequence Send to blast |
MEGVVTSTVS EPKQDNEPTD SSTELPRAIT DMETSAMHDP EAQKLIGHEA DTELTPYEGM 60 EFESEDAARD FYSKYARHAG FRIRISRYTR SRRDNSIISR RIVCSKEGFH ETRDCESLHV 120 DQKQQARVGT RVGCKAMLMI KKFGPDKWVV TKFIKNHNHG PVPPRKPHAG EHHDCDIMEN 180 PHSIEVDPID EPVEGMEFES EEAAKLFYIN YARVNGFRAR ISRYCRSRRD NSIISRQIVC 240 SKEGFREVRA RKDITDGGKT TKRPRMITRV GCKAMIVVKR MNSGKWMVSK FEKEHNHSLL 300 SSRAVPITSN DASREVIDFA ATSNDPNEVK AEGCSAGIQS NSTDSLTVLY NHLCQEAIKF 360 AKEGSVTEEI YHVAMNALKE AAEKVSEVKR SHPTMSQSKH EVMQMETMSA SQCSDEDKQK 420 TMTPQLKFLQ EPSPSLVLIP TNLLTHSSSN CADNIPLSCD LTINAREVRH VSESSCLAAN 480 RKEDSSQKYQ GKDERFHVLS KETTVAIPAI PLTLYMPIMK NPTGDSAECS PDIFPFSWNA 540 DGQYRLLAAP IEAVPISYRP AEPIQQPQRN FPNSGPLPGF LPKPNKRGKG PNSLVHATAL 600 ACGARVVPPE EAASLIKAIE SKIRSGGATI ANLSSSSLTP LIPEVTSMSS SSEDDEENDH 660 SEPLMVSVEH NCRDQSSEEM KLEADPSELE TEAENCSAQP ENENNGPTHF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK066641 | 0.0 | AK066641.1 Oryza sativa Japonica Group cDNA clone:J013072M14, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015630687.1 | 0.0 | uncharacterized protein LOC4332292 | ||||
TrEMBL | A0A0E0KBF8 | 0.0 | A0A0E0KBF8_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC03G10640.1 | 0.0 | (Oryza punctata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07500.1 | 7e-31 | FAR1 family protein |