PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC03G10640.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

FAR1

Protein Properties

Length: 710aa MW: 79018.7 Da PI: 6.1724

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC03G10640.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	85.8	6.5e-27	70	160	1	88
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fY++YA+++GF++r+s+ ++s+r+++i++r+ vCskeg++e+++ + +++++ r+ tr+gCka+l++kk +kw+vtk+ ++HnH OPUNC03G10640.1 70 DFYSKYARHAGFRIRISRYTRSRRDNSIISRRIVCSKEGFHETRDCEslhVDQKQQARVGTRVGCKAMLMIKKFGPDKWVVTKFIKNHNHG 160 6*****************************************99999899999*********************************5 PP
2	FAR1	86.6	3.7e-27	207	300	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY +YA+ GF+ r+s+ +s+r+++i++r+ vCskeg+re + +k ++++r+r+ tr+gCka+++vk++++gkw+v+k+e+eHnH+l OPUNC03G10640.1 207 FYINYARVNGFRARISRYCRSRRDNSIISRQIVCSKEGFREVRARKditdgGKTTKRPRMITRVGCKAMIVVKRMNSGKWMVSKFEKEHNHSLL 300 9****************************************9999999999999*********************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.0E-24	70	160	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	1.1E-24	207	300	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 710 aa Download sequence Send to blast
MEGVVTSTVS EPKQDNEPTD SSTELPRAIT DMETSAMHDP EAQKLIGHEA DTELTPYEGM 60 EFESEDAARD FYSKYARHAG FRIRISRYTR SRRDNSIISR RIVCSKEGFH ETRDCESLHV 120 DQKQQARVGT RVGCKAMLMI KKFGPDKWVV TKFIKNHNHG PVPPRKPHAG EHHDCDIMEN 180 PHSIEVDPID EPVEGMEFES EEAAKLFYIN YARVNGFRAR ISRYCRSRRD NSIISRQIVC 240 SKEGFREVRA RKDITDGGKT TKRPRMITRV GCKAMIVVKR MNSGKWMVSK FEKEHNHSLL 300 SSRAVPITSN DASREVIDFA ATSNDPNEVK AEGCSAGIQS NSTDSLTVLY NHLCQEAIKF 360 AKEGSVTEEI YHVAMNALKE AAEKVSEVKR SHPTMSQSKH EVMQMETMSA SQCSDEDKQK 420 TMTPQLKFLQ EPSPSLVLIP TNLLTHSSSN CADNIPLSCD LTINAREVRH VSESSCLAAN 480 RKEDSSQKYQ GKDERFHVLS KETTVAIPAI PLTLYMPIMK NPTGDSAECS PDIFPFSWNA 540 DGQYRLLAAP IEAVPISYRP AEPIQQPQRN FPNSGPLPGF LPKPNKRGKG PNSLVHATAL 600 ACGARVVPPE EAASLIKAIE SKIRSGGATI ANLSSSSLTP LIPEVTSMSS SSEDDEENDH 660 SEPLMVSVEH NCRDQSSEEM KLEADPSELE TEAENCSAQP ENENNGPTHF

Sequence ? help Back to Top

Protein Sequence Length: 710 aa Download sequence Send to blast

MEGVVTSTVS EPKQDNEPTD SSTELPRAIT DMETSAMHDP EAQKLIGHEA DTELTPYEGM  60
EFESEDAARD FYSKYARHAG FRIRISRYTR SRRDNSIISR RIVCSKEGFH ETRDCESLHV  120
DQKQQARVGT RVGCKAMLMI KKFGPDKWVV TKFIKNHNHG PVPPRKPHAG EHHDCDIMEN  180
PHSIEVDPID EPVEGMEFES EEAAKLFYIN YARVNGFRAR ISRYCRSRRD NSIISRQIVC  240
SKEGFREVRA RKDITDGGKT TKRPRMITRV GCKAMIVVKR MNSGKWMVSK FEKEHNHSLL  300
SSRAVPITSN DASREVIDFA ATSNDPNEVK AEGCSAGIQS NSTDSLTVLY NHLCQEAIKF  360
AKEGSVTEEI YHVAMNALKE AAEKVSEVKR SHPTMSQSKH EVMQMETMSA SQCSDEDKQK  420
TMTPQLKFLQ EPSPSLVLIP TNLLTHSSSN CADNIPLSCD LTINAREVRH VSESSCLAAN  480
RKEDSSQKYQ GKDERFHVLS KETTVAIPAI PLTLYMPIMK NPTGDSAECS PDIFPFSWNA  540
DGQYRLLAAP IEAVPISYRP AEPIQQPQRN FPNSGPLPGF LPKPNKRGKG PNSLVHATAL  600
ACGARVVPPE EAASLIKAIE SKIRSGGATI ANLSSSSLTP LIPEVTSMSS SSEDDEENDH  660
SEPLMVSVEH NCRDQSSEEM KLEADPSELE TEAENCSAQP ENENNGPTHF

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK066641	0.0	AK066641.1 Oryza sativa Japonica Group cDNA clone:J013072M14, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015630687.1	0.0	uncharacterized protein LOC4332292
TrEMBL	A0A0E0KBF8	0.0	A0A0E0KBF8_ORYPU; Uncharacterized protein
STRING	OPUNC03G10640.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9031	33	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	7e-31	FAR1 family protein