PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC03G10080.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

LBD

Protein Properties

Length: 274aa MW: 28134.7 Da PI: 8.1105

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC03G10080.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	130.2	8.7e-41	38	138	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll ++p ++r+da+ +++yeA+ar+rdPvyG+v++i++lqqq+ +l+ae OPUNC03G10080.1 38 PCGACKFLRRKCVSGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLLQIPAHKRPDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVNLQAE 131 7*********************9989************************************************************** PP DUF260 94 lallkee 100 l +l+++ OPUNC03G10080.1 132 LTYLQAH 138 99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.348	37	139	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.1E-40	38	136	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010089	Biological Process	xylem development
GO:0010199	Biological Process	organ boundary specification between lateral organs and the meristem
GO:0010311	Biological Process	lateral root formation
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MSSGAGASSA LGGGGGGGCG SGGGGGGPSG GSGGGGGPCG ACKFLRRKCV SGCIFAPYFD 60 SEQGAAHFAA VHKVFGASNV SKLLLQIPAH KRPDAVVTIC YEAQARLRDP VYGCVAHIFA 120 LQQQVVNLQA ELTYLQAHLA TLELPSPPPL MPAPPQMPMP APFSISDLPS STSVPTTVDL 180 SALFDPPPQP QWASPLQQQH HQHHHHQQQQ HQLRQPSYAT LARAPSGMTA AAESSGGGGG 240 GGGDLQALAR ELLDRHRSAV KLEQPPPPPP HSRS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-37	34	132	7	104	LOB family transfactor Ramosa2.1
5ly0_B	2e-37	34	132	7	104	LOB family transfactor Ramosa2.1
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Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the positive regulation of tracheary element (TE) differentiation. Involved in a positive feedback loop that maintains or promotes NAC030/VND7 expression that regulates TE differentiation-related genes. {ECO:0000269\|PubMed:19088331}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC226706	0.0	AC226706.2 Oryza minuta clone OM__Ba0084M12, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015629413.1	1e-123	LOB domain-containing protein 30
Swissprot	O81323	5e-71	LBD30_ARATH; LOB domain-containing protein 30
TrEMBL	A0A0E0KB88	0.0	A0A0E0KB88_ORYPU; Uncharacterized protein
STRING	OPUNC03G10080.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3346	37	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00220.1	1e-69	LBD family protein

Publications ? help Back to Top
Rast-Somssich MI, et al. The Arabidopsis JAGGED LATERAL ORGANS (JLO) gene sensitizes plants to auxin. J. Exp. Bot., 2017. 68(11): p. 2741-2755 [PMID:28472464] Liu C,Yu H,Li L SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana. PLoS Genet., 2019. 15(1): p. e1007928 [PMID:30657769]