PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC03G09650.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 719aa MW: 78905.3 Da PI: 6.3345 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.7 | 1.3e-08 | 14 | 56 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT +E++ + +a +q G++ +++I +++ ++ q++++++ + OPUNC03G09650.1 14 AWTRQEEQNFFNALRQVGKN-FEKITLRVQ-SKSKDQVRHYYYRL 56 6*****************99.*********.***********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.62E-9 | 10 | 60 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 13.155 | 10 | 61 | IPR017884 | SANT domain |
SMART | SM00717 | 5.2E-7 | 11 | 59 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.5E-7 | 14 | 56 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-5 | 14 | 63 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.06E-6 | 14 | 57 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 719 aa Download sequence Send to blast |
MSLVRSAPAR QWAAWTRQEE QNFFNALRQV GKNFEKITLR VQSKSKDQVR HYYYRLVRRM 60 KKLLGPEFSL DAKNSKDTIA AMLCWWSLLE KFSCSASKLH LKPRRFKTFV EALGNQLLKD 120 RNKTRKKCPR GDVCLSSSSS SLNRTPGNES FAVKLLSVDV SNGSKVGSSK GSFFKKVTEP 180 NCNNKSGATK GDLSATRTVK QKRRAGGVVA SAAYKKWERA AMAGVSLVAD AAEELERNTV 240 NADARMLSPS SSNFCTVDGL GTNHIKEADQ QAPAKLKLQL FPINEATRKA LEKDEHNPHL 300 ELTLSARKKI SSVLEHLNRK WGNSNIASGE LLLFPYCAHQ EDLATYQRWT TKDTVAVADV 360 FLSVNSPSVF RLRYGWFSLA ELEAGVSEIS LTHFENCLIP EDIHAKSPSE ACVQKDGNSV 420 SSCAPEQHPC SSKDQSALLL AIPSSTGKSA QVPEQCIDVP PSQFGRQNQD QVTTNQVFEV 480 DQGMDCAAVS EGEWADTLTD ISVGYLLTEA SRGVNTDCPG TSVVKNTLFL ENPCSYDSFD 540 AAVALHASRY KSAEQPALAS HSTIWGAEET CDAFSFNLAA SRKQECSNNS VSSSPDNDSD 600 VYPSNSKGFQ GFLQDLAGAE VADNPCIDDA KDIESLCAES PPRSDNDTAP KDQSLADLYW 660 PDSLGPLDLE IPSATYHADD LLLGDGQNSW NRMMANSLDA FRNLSFFTAD KNDSIPSIM |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK102688 | 0.0 | AK102688.1 Oryza sativa Japonica Group cDNA clone:J033102O16, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015632626.1 | 0.0 | TSL-kinase interacting protein 1 | ||||
Refseq | XP_015632627.1 | 0.0 | TSL-kinase interacting protein 1 | ||||
TrEMBL | A0A0E0KB40 | 0.0 | A0A0E0KB40_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC03G09650.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5478 | 36 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36960.2 | 1e-162 | TSL-kinase interacting protein 1 |