PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC03G09390.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB | ||||||||
Protein Properties | Length: 253aa MW: 26363.1 Da PI: 10.3118 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55 | 1.9e-17 | 25 | 69 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 W++eEd+ll ++v++ Gg++W Ia ++ gRt+k+c++rw+++l OPUNC03G09390.1 25 GWSKEEDKLLRELVRKQGGKDWGVIATAFP-GRTDKSCRLRWRQHL 69 5*****************************.************996 PP | |||||||
2 | Myb_DNA-binding | 46.6 | 7.7e-15 | 77 | 121 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +++++ Ed ++v++ + +G++ W+tIa+ ++ gR+++ +k+rw+++l OPUNC03G09390.1 77 LPFSAGEDRKIVELQRVHGNR-WATIAAFLP-GRSDNAVKNRWNTHL 121 589999***************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 21.335 | 18 | 73 | IPR017930 | Myb domain |
SMART | SM00717 | 6.7E-17 | 22 | 71 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.5E-19 | 22 | 72 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.11E-29 | 22 | 117 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.9E-16 | 25 | 69 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.27E-17 | 26 | 69 | No hit | No description |
SMART | SM00717 | 2.3E-12 | 75 | 123 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.79E-12 | 78 | 121 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.4E-19 | 78 | 122 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.1E-12 | 78 | 121 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 18.243 | 78 | 125 | IPR017930 | Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MALEGATGGG GGGGLPGQEA GKKVGWSKEE DKLLRELVRK QGGKDWGVIA TAFPGRTDKS 60 CRLRWRQHLD PSVDVALPFS AGEDRKIVEL QRVHGNRWAT IAAFLPGRSD NAVKNRWNTH 120 LRKRHAQDGQ QRPPPGGLGL GGGCSGGGGA GQAAGGKLTP VCLPLFPLTP GFHHKQAPPI 180 GENLPGPARS AVPELLELFP LAPGDLRDNA SAAAAAAAAA MDVGTEAVRA LTELRLAPAA 240 VVFDAMPLQA IRM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-28 | 26 | 124 | 10 | 107 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC137696 | 0.0 | AC137696.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0049C20, from chromosome 3, complete sequence. | |||
GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015630256.1 | 1e-127 | transcription factor MYB1 | ||||
TrEMBL | A0A0E0KB08 | 1e-179 | A0A0E0KB08_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC03G09390.1 | 1e-180 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4960 | 34 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G55730.1 | 1e-32 | myb domain protein 109 |