PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G09070.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 641aa    MW: 68470.4 Da    PI: 6.7966
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G09070.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.62.8e-12292348155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV++++++gr++A+++d  +  +g  rk  + g ++t+++Aa+a++ a++k++g
  OPUNC03G09070.1 292 SQYRGVTRHRWTGRYEAHLWDnSCRkDGqTRKGRQ-GGYDTEDKAARAYDLAALKYWG 348
                      78*******************54445554335555.77***99*************97 PP
2AP246.87.1e-15391442155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  OPUNC03G09070.1 391 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 442
                      57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.75E-14292358IPR016177DNA-binding domain
PfamPF008471.2E-9292348IPR001471AP2/ERF domain
CDDcd000181.73E-17292356No hitNo description
Gene3DG3DSA:3.30.730.106.0E-12293357IPR001471AP2/ERF domain
PROSITE profilePS5103217.662293356IPR001471AP2/ERF domain
SMARTSM003803.5E-21293362IPR001471AP2/ERF domain
PRINTSPR003674.8E-6294305IPR001471AP2/ERF domain
CDDcd000181.19E-23391452No hitNo description
SuperFamilySSF541711.44E-17391451IPR016177DNA-binding domain
PfamPF008478.9E-10391442IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.0E-18392450IPR001471AP2/ERF domain
PROSITE profilePS5103219.045392450IPR001471AP2/ERF domain
SMARTSM003801.3E-33392456IPR001471AP2/ERF domain
PRINTSPR003674.8E-6432452IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 641 aa     Download sequence    Send to blast
MASGGGSNWL GFSLSPHMPA LEVPSSSEPA TAAHHHPHSP PAAAAGAMSS PPDSATTCNF  60
LFSPPAAQMV APSPGYYYVG GAYGDGTSTA GVYYSHLPVM PIKSDGSLCI MEVGMMPSSS  120
PKLEDFLGCG NGSGAHDPAT YYSHGQEAED ASRAAYQHHQ LVPYNYQPLT EAEMLQEAAA  180
APMEDAMAAA KNFLVTSYSA CYGNQEMPQP LSLSMSPGSQ SSSCVSAAPQ QHQQMAMVAA  240
AAAPVAAAAA GQGSNSNDGG ELRVGKKRGT GKGGQKQPVH RKSIDTFGQR TSQYRGVTRH  300
RWTGRYEAHL WDNSCRKDGQ TRKGRQGGYD TEDKAARAYD LAALKYWGLS THINFPLENY  360
RDEIEEMERM TRQEYVAHLR RRSSGFSRGA SIYRGVTRHH QHGRWQARIG RVAGNKDLYL  420
GTFSTQEEAA EAYDIAAIKF RGLNAVTNFD ITRYDVDKIM ESSSLLPGEA ARKVKAIEAA  480
PDHVAIGREL SATEEASATT GMGTDWRMVL HGSQQQQAAA CTEATVDLQK GFMSDAHSAL  540
HGIVGFDVES ATAEEIDVPG GKISGINFSN SSSLVTSLSN SREGSPERLG LAMLYAKHHP  600
SAVGLATMSP WMPMPVPAAA HVMRPPSAIA HLPVFAAWTD A
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1063060.0AK106306.1 Oryza sativa Japonica Group cDNA clone:002-101-C10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629410.10.0AP2-like ethylene-responsive transcription factor CRL5 isoform X2
SwissprotQ84Z021e-146CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A0E0KAX20.0A0A0E0KAX2_ORYPU; Uncharacterized protein
STRINGOPUNC03G09070.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94838133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-103AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]