PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G09020.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 288aa    MW: 30348 Da    PI: 8.418
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G09020.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.25.7e-18124178256
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      rk+ ++tkeq   Le+ F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  OPUNC03G09020.1 124 RKKLRLTKEQSALLEDRFREHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTK 178
                      788899***********************************************98 PP
2HD-ZIP_I/II125.22.9e-40124213191
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                      +kk+rl+keq++lLE+ F+e+++L+p++Kv+la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL++e +eLr +l
  OPUNC03G09020.1 124 RKKLRLTKEQSALLEDRFREHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEENRRLQRELQELR-AL 213
                      69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-17102181IPR009057Homeodomain-like
SuperFamilySSF466891.07E-18117181IPR009057Homeodomain-like
PROSITE profilePS5007117.216120180IPR001356Homeobox domain
SMARTSM003892.1E-15122184IPR001356Homeobox domain
PfamPF000462.6E-15124178IPR001356Homeobox domain
CDDcd000863.58E-16124181No hitNo description
PROSITE patternPS000270155178IPR017970Homeobox, conserved site
SMARTSM003402.7E-24180223IPR003106Leucine zipper, homeobox-associated
PfamPF021836.8E-11180214IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MAQEDVGHLS DAGLALGLSL GSGGGGTTDA AAAHRGGCRR PSPSSQCPPL EPSLTLSMPD  60
DATPGAAATA TATASGGGGP AHSVSSLSVG AAAAVKRERA EEADGERVSS TAAGRDDDDD  120
GSTRKKLRLT KEQSALLEDR FREHSTLNPK QKVALAKQLN LRPRQVEVWF QNRRARTKLK  180
QTEVDCEFLK RCCETLTEEN RRLQRELQEL RALKFAPPPP SSAVHQPPPP APFYMQLPAA  240
TLTICPSCER VGGPASAAKV VAADGTKAGP GRTTTHHFFN PFTHSAAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1122128TRKKLRL
2172180RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2264090.0AC226409.1 Oryza minuta clone OM__Ba0090E21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627844.11e-163homeobox-leucine zipper protein HOX19 isoform X2
SwissprotA2XE761e-164HOX19_ORYSI; Homeobox-leucine zipper protein HOX19
SwissprotQ8GRL41e-164HOX19_ORYSJ; Homeobox-leucine zipper protein HOX19
TrEMBLA0A0E0KAW70.0A0A0E0KAW7_ORYPU; Uncharacterized protein
STRINGOPUNC03G09020.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20553698
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.11e-56homeobox from Arabidopsis thaliana