PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G08660.2
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HSF
Protein Properties Length: 410aa    MW: 45544.7 Da    PI: 4.8196
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G08660.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind103.81.4e-32551462103
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+ye+++d++++++isw e g sfv++d++ f++  L+++Fkhsnf+SF+RQLn+YgF+kv+ ++         we++++ F  g+k+ll+
  OPUNC03G08660.2  55 FLTKVYEMVSDPATDNVISWAEGGGSFVIWDSHAFER-DLHRHFKHSNFTSFIRQLNTYGFRKVHPDR---------WEWANEGFIMGQKHLLK 138
                      9************************************.8**************************999.........***************** PP

                      XXXXXXXX CS
     HSF_DNA-bind  96 kikrkkse 103
                      +ikr+k++
  OPUNC03G08660.2 139 TIKRRKKS 146
                      *****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.4E-3347138IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004159.8E-5051143IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.65E-3151143IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.9E-165578IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.3E-2855143IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-1692104IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434093117IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-16105117IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MGSKKRSPQH PAAAEPAPST VVLVGGGGGG EVSGDGGAST ANGPVVPKPS EVAPFLTKVY  60
EMVSDPATDN VISWAEGGGS FVIWDSHAFE RDLHRHFKHS NFTSFIRQLN TYGFRKVHPD  120
RWEWANEGFI MGQKHLLKTI KRRKKSSQEA PSEIQKAPVK TAPGTENIEI GKYGGLEKEV  180
ETLKRDKALL MQQLVDLRHY QQTSNLEVQN LIERLQVMEQ NQQQMMALLA IVVQNPSFLN  240
QLVQQQQQQR RSNWWSPDGS KKRRFHALEQ GPVTDQETSG RGAHIVEYLP PVPETSGQVN  300
PVEGAICSAN SQPVPSPAVA TPMDMQTSNI ADTLGSSEEP FTDNSTLHEW DDNDMQLLFD  360
DNLDPVLPPF GNDGQMDPPL SIQDYDFPQL EQDCLMEAQY NSNNTQYGND
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-223614310129Heat shock factor protein 1
5d5v_B3e-223614310129Heat shock factor protein 1
5d5v_D3e-223614310129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136142LKTIKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3444900.0AY344490.1 Oryza sativa (japonica cultivar-group) heat shock factor RHSF8 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633341.10.0heat stress transcription factor A-9
SwissprotQ10PR40.0HSFA9_ORYSJ; Heat stress transcription factor A-9
TrEMBLA0A0E0KAR40.0A0A0E0KAR4_ORYPU; Uncharacterized protein
STRINGOPUNC03G08660.10.0(Oryza punctata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.21e-71heat shock factor 3
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]