PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G06340.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CAMTA
Protein Properties Length: 1048aa    MW: 116656 Da    PI: 6.2113
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G06340.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1119.51.6e-37931953118
             CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 
                      ke ++rwl+++ei++iL+n+++++++ e+++rp+sgsl+L++rk              k+dgktv+E+he+LK g+++vl+cyYah+een +fq
  OPUNC03G06340.1  93 KEaQRRWLRPTEICKILKNYRSFRIAPEPPNRPPSGSLFLFDRK--------------KRDGKTVKEAHERLKSGSIDVLHCYYAHGEENINFQ 172
                      55599*************************************85..............689********************************* PP

             CG-1  96 rrcywlLeeelekivlvhylevk 118
                      rr+yw+Lee++ +ivlvhylevk
  OPUNC03G06340.1 173 RRSYWMLEEDYMHIVLVHYLEVK 195
                      ********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143752.39188200IPR005559CG-1 DNA-binding domain
SMARTSM010762.2E-5491195IPR005559CG-1 DNA-binding domain
PfamPF038599.9E-3294194IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.105.3E-7460546IPR013783Immunoglobulin-like fold
CDDcd001026.57E-5461548No hitNo description
SuperFamilySSF812963.85E-17462547IPR014756Immunoglobulin E-set
PfamPF018332.0E-8462539IPR002909IPT domain
SuperFamilySSF484039.33E-17650754IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.205.7E-18652758IPR020683Ankyrin repeat-containing domain
CDDcd002044.97E-13653751No hitNo description
PROSITE profilePS500888.79659691IPR002110Ankyrin repeat
PROSITE profilePS5029718.086659763IPR020683Ankyrin repeat-containing domain
SMARTSM002480.013692721IPR002110Ankyrin repeat
PROSITE profilePS500888.843692724IPR002110Ankyrin repeat
SMARTSM002482000731760IPR002110Ankyrin repeat
SuperFamilySSF525403.19E-8863916IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.075865887IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.407866895IPR000048IQ motif, EF-hand binding site
PfamPF006120.0034867886IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0022888910IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.578889913IPR000048IQ motif, EF-hand binding site
PfamPF006122.0E-4891910IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1048 aa     Download sequence    Send to blast
MMRAVSSCFP LPRLASPIPS PKATPATYRL SCRTPTKPPR EISPGSPGVG ARSRSRRRSG  60
ESAGRRARGG LFAMAEGRRY AIAPQLDIEQ ILKEAQRRWL RPTEICKILK NYRSFRIAPE  120
PPNRPPSGSL FLFDRKKRDG KTVKEAHERL KSGSIDVLHC YYAHGEENIN FQRRSYWMLE  180
EDYMHIVLVH YLEVKAGKLS SRSTGHDDIL QASRVDSPLS QLPSQTTEGE SSVSGQASEY  240
DETESGSYQG LQATAPNTGF YSHGQDNLPV VLNESDLGTA FNGPNSQCDL SLWIEAMKPD  300
KGTHQIPLYQ APVPSDQTPF IGGPGIESFT FDEVYNNGLS IKDVDGDDTD GETPWQIPNA  360
SDTFATVDSF QQNDKTLEEA INYPPLKTQS SSLSDIIKDS FKKNDSFTRW MSKELAEVDD  420
SQITSSSGVY WNSEEADNII EASSSDQYTL GPVLAQDQLF SIVDFSPTWT YAGSKTRVFI  480
KGNFLNSDEV KRLKWSCMFG EDEVPAEIIA DDTLVCYSPS HKPGRVPFYV TCSNRLACSE  540
VREFEFRPQY MDAPSPHGST NKTYLQKRLD KLLSLEQDEI QATLSNPTKE IIDLSKKISS  600
LMMNNDDWSE LLKLADDNDP ATDDKQDQFL QNCIKEKLLI WLLHKVGDGG KGPSVLDEEG  660
QGVLHLAAAL GYDWAIRPTI TAGVNINFRD AHGWTALHWA AFCGRERTVV ALIALGAAPG  720
AVTDPTPSFP SGSTPADLAS TNGHKGISGF LAESSLTSHL QTLNLKEAMR SSAGEISGLP  780
GIVNVADRST LPLAVEGRQT GSMGDSLGAV RNAAQAAARI YEVFRMQSFQ RKQAVQYEDD  840
NGVISDERAM SLLSAKPSKP AQLDPLHAAA TRIQNKFRGW KGRKEFLLIR QRIVKIQAHV  900
RGHQVRKHYR KIIWSVGIVE KVILRWRRRG AGLRGFRPTE NAVSESTSSS SGNVTQNMPA  960
ENDYDFLQEG RKQTEERLQK ALARVKSMVQ YPDARDQYQR ILTVVTKMQE SQAMQEKMLE  1020
ESTDMDEGLL MSEFKELWDD DVPTPGYF
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25627216, ECO:0000305|PubMed:11925432}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:25627216}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0666510.0AK066651.1 Oryza sativa Japonica Group cDNA clone:J013074G10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631249.10.0calmodulin-binding transcription activator 1 isoform X2
SwissprotQ6NPP40.0CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBLA0A0E0K9W50.0A0A0E0K9W5_ORYPU; Uncharacterized protein
STRINGOPUNC03G06340.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60838140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]