PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G06250.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 314aa    MW: 34009.2 Da    PI: 4.4627
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G06250.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.21.4e-1871123456
                      -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      ++++  eq+++Le+ F  +++++ ++++++A+ lgL+ rqV vWFqNrRa++k
  OPUNC03G06250.1  71 KRRLALEQVRALERGFDADNKLDPDRKARIARDLGLQPRQVAVWFQNRRARWK 123
                      4467789*********************************************9 PP
2HD-ZIP_I/II126.61.1e-4069161193
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                      ekkrrl+ eqv++LE+ F++++kL+p+rK+++ar+LglqprqvavWFqnrRAR+ktkqlE+d++aL++++dal+++ ++L++++++L++e++e
  OPUNC03G06250.1  69 EKKRRLALEQVRALERGFDADNKLDPDRKARIARDLGLQPRQVAVWFQNRRARWKTKQLERDFAALRSRHDALRADCDALRRDKDALAAEIRE 161
                      69**************************************************************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.27E-1860127IPR009057Homeodomain-like
SMARTSM003892.8E-1868129IPR001356Homeobox domain
PROSITE profilePS5007116.16369125IPR001356Homeobox domain
CDDcd000865.95E-1670126No hitNo description
PfamPF000467.1E-1671123IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.0E-1977124IPR009057Homeodomain-like
PRINTSPR000312.8E-596105IPR000047Helix-turn-helix motif
PROSITE patternPS000270100123IPR017970Homeobox, conserved site
PRINTSPR000312.8E-5105121IPR000047Helix-turn-helix motif
PfamPF021831.1E-15125166IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MKRPTSSRKS RKPEENLAFS EEGSLPAVTM EQQDEAELEE VDDDDEVDED KAGGHAAQSS  60
APPSCGLGEK KRRLALEQVR ALERGFDADN KLDPDRKARI ARDLGLQPRQ VAVWFQNRRA  120
RWKTKQLERD FAALRSRHDA LRADCDALRR DKDALAAEIR ELREKLSKPA DTAASVKVEA  180
GSVDAAVGAA AAVATVYKDG SSDDSDSSVV FNDEASPYSG AAFEQQQPGF IGFGSSFLID  240
ASAATVGCAS LPALESKWHG PYSYDSCKGG GYGFTEEWLA ASGEMDNDAA GFFSDEHASN  300
LNFGWCASGN EGWE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1117125RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1015220.0AK101522.1 Oryza sativa Japonica Group cDNA clone:J033046N04, full insert sequence.
GenBankAK1016010.0AK101601.1 Oryza sativa Japonica Group cDNA clone:J033051J21, full insert sequence.
GenBankAK1056440.0AK105644.1 Oryza sativa Japonica Group cDNA clone:001-200-F05, full insert sequence.
GenBankCT8310390.0CT831039.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA023E12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006649529.11e-159PREDICTED: homeobox-leucine zipper protein HOX13-like
SwissprotQ10QP31e-156HOX13_ORYSJ; Homeobox-leucine zipper protein HOX13
TrEMBLA0A0E0K9V40.0A0A0E0K9V4_ORYPU; Uncharacterized protein
STRINGOPUNC03G06250.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42833170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65310.21e-32homeobox protein 5
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]