PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G06100.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MIKC_MADS
Protein Properties Length: 247aa    MW: 27708.4 Da    PI: 8.6764
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G06100.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF79.72.1e-252776251
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     ri+n   rqvtfskRr g++KKAeELS+LCdaev +++fs tgkl+ ++s
  OPUNC03G06100.1 27 RIDNLAARQVTFSKRRRGLFKKAEELSILCDAEVGLVVFSATGKLFQFAS 76
                     89*********************************************986 PP
2K-box41.46.3e-151071891698
            K-box  16 slqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                      + +   a+Lkke+ +    +R++ Ge+L++L++++Lq+Le+ Le++l ++ ++K++ +l++i+ l +k  +l een +L++++
  OPUNC03G06100.1 107 EDSSTCARLKKELAETSLRLRQMRGEELHRLNVEQLQELEKSLESGLGSVLKTKSKKILDEIDGLERKRMQLIEENLRLKEQV 189
                      5567789**********99************************************************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.9E-331877IPR002100Transcription factor, MADS-box
PROSITE profilePS5006627.0531878IPR002100Transcription factor, MADS-box
PROSITE patternPS0035002074IPR002100Transcription factor, MADS-box
CDDcd002651.03E-372091No hitNo description
SuperFamilySSF554551.44E-292097IPR002100Transcription factor, MADS-box
PRINTSPR004049.0E-252040IPR002100Transcription factor, MADS-box
PfamPF003191.8E-242774IPR002100Transcription factor, MADS-box
PRINTSPR004049.0E-254055IPR002100Transcription factor, MADS-box
PRINTSPR004049.0E-255576IPR002100Transcription factor, MADS-box
PROSITE profilePS5129712.093105195IPR002487Transcription factor, K-box
PfamPF014863.1E-13110189IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009266Biological Processresponse to temperature stimulus
GO:0009910Biological Processnegative regulation of flower development
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048438Biological Processfloral whorl development
GO:0005634Cellular Componentnucleus
GO:0000900Molecular Functiontranslation repressor activity, nucleic acid binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MAGGGGGKAE GEGRAAAGKR ERIVIRRIDN LAARQVTFSK RRRGLFKKAE ELSILCDAEV  60
GLVVFSATGK LFQFASTSMK QIIDRYHSHS KTLQRAEEPS QLDLHGEDSS TCARLKKELA  120
ETSLRLRQMR GEELHRLNVE QLQELEKSLE SGLGSVLKTK SKKILDEIDG LERKRMQLIE  180
ENLRLKEQVS RMSRMEEMQP GPDSEIVYEE GQSSESVTNA SYPRPPPDND YSSDTSLRLG  240
LPLFSSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-192090373MEF2C
5f28_B2e-192090373MEF2C
5f28_C2e-192090373MEF2C
5f28_D2e-192090373MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00272DAPTransfer from AT2G22540Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2422110.0AK242211.1 Oryza sativa Japonica Group cDNA, clone: J075171C16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630611.11e-159MADS-box transcription factor 47 isoform X2
SwissprotQ5K4R01e-155MAD47_ORYSJ; MADS-box transcription factor 47
TrEMBLA0A0E0K9T71e-178A0A0E0K9T7_ORYPU; Uncharacterized protein
STRINGOPUNC03G06100.11e-178(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12213697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.11e-69MIKC_MADS family protein
Publications ? help Back to Top
  1. Lee S,Choi SC,An G
    Rice SVP-group MADS-box proteins, OsMADS22 and OsMADS55, are negative regulators of brassinosteroid responses.
    Plant J., 2008. 54(1): p. 93-105
    [PMID:18182025]
  2. Lee S,Jeong DH,An G
    A possible working mechanism for rice SVP-group MADS-box proteins as negative regulators of brassinosteroid responses.
    Plant Signal Behav, 2008. 3(7): p. 471-4
    [PMID:19704489]