PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC03G06010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | B3 | ||||||||
Protein Properties | Length: 229aa MW: 25508.3 Da PI: 9.8754 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 44.1 | 3.6e-14 | 142 | 219 | 13 | 99 |
TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 s+ + lp++f+e++ k + +tl de+ ++++ ++ ++++ l++GW +F+ ++gL +gD vF+l++ ++f +v+++r+ OPUNC03G06010.1 142 SH-VGLPRHFCETYLPK--HDAIVTLLDEKDEEFSTNY--LAYKNG--LSGGWAGFALDHGLLDGDATVFQLVKPTTF--KVHIIRA 219 33.78*********422..4568***************..566555..9**********************9986666..9999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.1E-18 | 127 | 220 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 9.81E-22 | 128 | 219 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.18E-22 | 133 | 218 | No hit | No description |
SMART | SM01019 | 4.9E-15 | 135 | 220 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.6E-12 | 142 | 219 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.461 | 146 | 220 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MGMEKGMTAY EAARERTVEE NKRKMEALNL RHLSAAITVA PKTPSPMKQK RRRIIEAAVV 60 APSPPRRSRR LANLPEVKYA EVAPDGAERM KRSPRKAIDS IYLATRGSIS MEARLEAARK 120 AEELESQLDP GFPSFVKPML HSHVGLPRHF CETYLPKHDA IVTLLDEKDE EFSTNYLAYK 180 NGLSGGWAGF ALDHGLLDGD ATVFQLVKPT TFKVHIIRAT IDDGNVATK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 49 | 53 | KRRRI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK122017 | 0.0 | AK122017.1 Oryza sativa Japonica Group cDNA clone:J033111M07, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015633231.1 | 1e-161 | B3 domain-containing protein Os03g0184500 | ||||
Swissprot | Q10QS9 | 1e-162 | Y3845_ORYSJ; B3 domain-containing protein Os03g0184500 | ||||
TrEMBL | A0A0E0K9S4 | 1e-168 | A0A0E0K9S4_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC03G06010.1 | 1e-169 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1756 | 38 | 103 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42700.1 | 5e-41 | B3 family protein |
Publications ? help Back to Top | |||
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