PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G05880.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 666aa    MW: 70900.2 Da    PI: 5.5962
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G05880.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.95.1e-1896146155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y GVr+++ +g+W+AeIrdp+e     r++lg+f tae Aa a++aa++ l+g
  OPUNC03G05880.1  96 SKYWGVRRRP-WGKWAAEIRDPVE---GVRVWLGTFATAEAAAHAYDAAARDLRG 146
                      79********.**********866...3************************998 PP
2AP259.67.6e-19440489255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      +++G+r+++ +g+W+AeIrdp     + +r++lg+f t+eeAa+a++  +++l+g
  OPUNC03G05880.1 440 HFRGIRQRP-WGKWAAEIRDPH----KgTRVWLGTFNTPEEAARAYDVEARRLRG 489
                      69*******.**********72....35*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.27E-1596156No hitNo description
SuperFamilySSF541712.29E-2196155IPR016177DNA-binding domain
PfamPF008477.6E-1196146IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-3097156IPR001471AP2/ERF domain
SMARTSM003801.7E-3297160IPR001471AP2/ERF domain
PROSITE profilePS5103223.56597154IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-31439498IPR001471AP2/ERF domain
PROSITE profilePS5103223.446440497IPR001471AP2/ERF domain
SMARTSM003801.0E-37440503IPR001471AP2/ERF domain
CDDcd000187.19E-28440499No hitNo description
PfamPF008477.8E-12440489IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-21440498IPR016177DNA-binding domain
PRINTSPR003671.5E-10441452IPR001471AP2/ERF domain
PRINTSPR003671.5E-10463479IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 666 aa     Download sequence    Send to blast
MCGGAILAKI IPTTPARRVT AAHVWPGGDG EKRRKVGGGG CDDDFEAAFE RFGRDDSEKE  60
EEEDEVVVAV GKKAAVRRRG GQVVAPAAAG RRARPSKYWG VRRRPWGKWA AEIRDPVEGV  120
RVWLGTFATA EAAAHAYDAA ARDLRGASAK LNFPSSSTAT TPRHRKRRPT AAPTATPNVV  180
VDLVDEEAEA SESSGASSAL PDFSWQGMSA SSDDGAAQPV LLDADTDHTI ELASACGAKK  240
RPRSEPHVTS DEVLPASFDS DNTAGGLLPF DDPFLFGDQF GYFNGDAFAS LMDGLFAAGE  300
ANVAGESVGL WSFGDDCLSA SKRSGRPKQR AMCGGAILAE FIPPPSRAAA AKRVTARHLW  360
PSGSKNGGGG KSKRQQRSFA DVDDFEAAFE QFDDDSDFDD AEEEDDEHFP SRSFVFASKS  420
PVAHDGHAAR AASKKKRGRH FRGIRQRPWG KWAAEIRDPH KGTRVWLGTF NTPEEAARAY  480
DVEARRLRGS KAKVNFPATP AARPRRGGGG GAKTKQQCPP PPATAPAAPP RGLKRELSPP  540
ETAGPFFTGS FVDLATAAPP QAMMTSSFTD SFATSESGGS PAKKARSSDD SSEGSVGGGD  600
TLGFTDELEF DPFMLFQLPY SDGYESIDSL FAAGDAVHDA NSANTDMNGG VNLWSFDDFP  660
IDSALF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-2193497163ATERF1
3gcc_A6e-2193497163ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2297400.0AC229740.1 Oryza minuta clone OM__Ba0228D20, complete sequence.
GenBankAC2297610.0AC229761.1 Oryza minuta clone OM__Ba0159K04, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630585.11e-132ethylene-responsive transcription factor ERF073
TrEMBLA0A0E0K9Q30.0A0A0E0K9Q3_ORYPU; Uncharacterized protein
STRINGOPUNC03G05880.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79873040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.32e-27ERF family protein