PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G05370.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 525aa    MW: 56127.4 Da    PI: 7.801
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G05370.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.89.8e-12243299155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s+++GV++++++gr++A+++d  + ++  ++ k  + g ++ +e+Aa+a++ a++k++g
  OPUNC03G05370.1 243 SQFRGVTRHRWTGRYEAHLWDnTC-RKegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 299
                      789******************333.44555535555.779999**************98 PP
2AP246.49.9e-15344393355
              AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  OPUNC03G05370.1 344 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 393
                      9***************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.09E-14243309IPR016177DNA-binding domain
CDDcd000187.29E-17243309No hitNo description
PfamPF008471.1E-8244299IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.1E-12244308IPR001471AP2/ERF domain
SMARTSM003802.0E-22244313IPR001471AP2/ERF domain
PROSITE profilePS5103216.871244307IPR001471AP2/ERF domain
PRINTSPR003678.9E-6245256IPR001471AP2/ERF domain
CDDcd000182.92E-23342403No hitNo description
SuperFamilySSF541719.15E-18342403IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.3E-18343401IPR001471AP2/ERF domain
SMARTSM003802.9E-33343407IPR001471AP2/ERF domain
PROSITE profilePS5103219.203343401IPR001471AP2/ERF domain
PfamPF008471.4E-9344393IPR001471AP2/ERF domain
PRINTSPR003678.9E-6383403IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MDMNNGWLGF SLSSSSARGY GDGCGEGNGG GDADGSCSSP VAASPLVAMP LHSDGSVHYD  60
APDWRHAEAK DPKLEDFMSV SYSNKSSNSS HADQIKYHHV HDVQAFSTPY FHGHGGSGVG  120
IDINMNAPPA SCTGGLPDHR PPPPQDHIFL PSHGQYFLGP PNPMAPPPMY NAGGGGGGGG  180
GVDGSMSISG IKSWLRQAMY VPERSAAALS LSVPAAPPSE APLPPAAMPV VRKPAQTFGQ  240
RTSQFRGVTR HRWTGRYEAH LWDNTCRKEG QTRKGRQGGY DKEEKAARAY DLAALKYWGP  300
TTHINFPLST YEKELEEMKH MTRQEFIAHL RRNSSGFSRG ASMYRGVTRH HQHGRWQARI  360
GRVAGNKDLY LGTFSTQEEA AEAYDIAAIK FRGLNAVTNF DISKYDVKRI CSSTHLIGGD  420
LACRRSPTRM LPDAPAAATV DVVVAPGDQQ SAGGGASDNS DTSDSHRGAH LLHGLQYAHA  480
MKFEAGESSG GGGGTTNWMA AAAARPVAGI PTTVHQLPVF ALWND
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2262600.0AC226260.1 Oryza minuta clone OM__Ba0163J16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629390.10.0AP2-like ethylene-responsive transcription factor AIL5
SwissprotQ1PFE11e-119AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
TrEMBLA0A0E0K9H10.0A0A0E0K9H1_ORYPU; Uncharacterized protein
STRINGOPUNC03G05370.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79738151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-114AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]