PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC03G05000.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 309aa MW: 33542.1 Da PI: 6.7433 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.9 | 3.6e-18 | 120 | 173 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rqV +WFqNrRa++k OPUNC03G05000.1 120 KKRRLNVEQVRTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWK 173 4568999**********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 129.9 | 1e-41 | 119 | 210 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekkrrl+ eqv++LE++Fe +kLeperK++lar+Lglqprqva+WFqnrRAR+ktkqlEkdy+aLkr++da++++n++L +++++L++e+ OPUNC03G05000.1 119 EKKRRLNVEQVRTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDALKRQLDAVMADNDALLSHNKKLQAEIV 210 69**************************************************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-19 | 97 | 176 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.07E-19 | 111 | 177 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.41 | 115 | 175 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.2E-17 | 118 | 179 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.75E-16 | 120 | 176 | No hit | No description |
Pfam | PF00046 | 1.7E-15 | 120 | 173 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 1.0E-5 | 146 | 155 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 150 | 173 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.0E-5 | 155 | 171 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 4.4E-14 | 175 | 215 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009744 | Biological Process | response to sucrose | ||||
GO:0048826 | Biological Process | cotyledon morphogenesis | ||||
GO:0080022 | Biological Process | primary root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 309 aa Download sequence Send to blast |
MASNGMASSP SSFFPPNFLL HMAQQQAAPP HDPQEHHHHG HHGHHEQHHH LGPPPPHPHN 60 PFLPSSAQCP SSLQEFRGMA PMLGKRPMSY GDGGGDEVNG GGGGGGEDEL SDDGSQAGEK 120 KRRLNVEQVR TLEKNFELGN KLEPERKMQL ARALGLQPRQ VAIWFQNRRA RWKTKQLEKD 180 YDALKRQLDA VMADNDALLS HNKKLQAEIV ALKGREAASE LINLNKETEA SCSNRSENSS 240 EINLDISRPP PPAAAALDAA PTAHHHGGGG GGGGGNVQAS VDTASFGNLL CGVDEPPPFW 300 PWPDHQHFH |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 167 | 175 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00225 | DAP | Transfer from AT1G69780 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC229787 | 0.0 | AC229787.1 Oryza minuta clone OM__Ba0057D03, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015629266.1 | 1e-155 | homeobox-leucine zipper protein HOX21 | ||||
Swissprot | Q8S7W9 | 1e-156 | HOX21_ORYSJ; Homeobox-leucine zipper protein HOX21 | ||||
TrEMBL | A0A0E0K9C4 | 0.0 | A0A0E0K9C4_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC03G05000.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2289 | 38 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69780.1 | 1e-70 | HD-ZIP family protein |